PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.116850.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 379aa    MW: 41854 Da    PI: 7.8261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.116850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.6e-06126146526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f++ G C  Gd C FaHg
  Cucsa.116850.1 126 ACADFRK-GSCVKGDACEFAHG 146
                     799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.145121148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0063121147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5126148IPR000571Zinc finger, CCCH-type
SMARTSM0035614156179IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643156180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MIVGEQPKRT NPTVQIPQWS FLEDSGMDVY SHSPGSGGSS GSEALAMLKR YLPSNEAEMD  60
SDIDVSGKEI DSPLDAYSSD QFRMYEFKIK KCTRGRSHDW TECPFAHPGE KARRRDPRRY  120
YYSGTACADF RKGSCVKGDA CEFAHGVFEC WLHPARYRTQ PCKDGTSCRR RVCFFAHTPE  180
QLRVLPQQSP RSTSSIPSYD GSPLRQAIEA CAKQMPYLSS PGTSPPVSPR IESPPQSPII  240
KSLNRPHAPS SIKEMVASLR NLQLNKELCK LPSPSSSSSS WNVQVGSPVF GSPKESTTRP  300
GLSTLPETST PPGIRYLDFW DLGTGEEPAM ERVESGRDLR AKMFEKLRKE NSVGCGDQDK  360
NSSGAGGLDV DWISELLQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648617.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-124C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1S3C9K70.0A0A1S3C9K7_CUCME; zinc finger CCCH domain-containing protein 20-like
STRINGXP_004157904.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-121C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]