PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.116550.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 194aa    MW: 20246.4 Da    PI: 6.5372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.116550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1754104155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Cucsa.116550.1  54 PSYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPDMAARAHDVAALTIKG 104
                     57*****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-1254104IPR001471AP2/ERF domain
CDDcd000181.20E-2954114No hitNo description
PROSITE profilePS5103222.57655112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3155113IPR001471AP2/ERF domain
SMARTSM003801.7E-3555118IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2055113IPR016177DNA-binding domain
PRINTSPR003677.7E-105667IPR001471AP2/ERF domain
PRINTSPR003677.7E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MADATVPDID SGGANSSSSS SSSSTSGSIS SPSKQAIGRR PKRGRESSNN SPHPSYRGVR  60
MRAWGKWVSE IREPKKKSRI WLGTFATPDM AARAHDVAAL TIKGNSAILN FPELAASFPR  120
PASSSPRDVQ SAAALAASMQ LPDVMISPPP PPPSPPSSPP CSSSSELDES TPEELSEIVV  180
LPSLGTGYEE SAES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18511131073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139438.11e-133PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9LYD31e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3C7X68e-93A0A1S3C7X6_CUCME; dehydration-responsive element-binding protein 3-like
STRINGXP_004139438.11e-132(Cucumis sativus)
STRINGXP_004165092.11e-132(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]