PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.114380.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 272aa    MW: 32122.2 Da    PI: 4.7263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.114380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07221240625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G rC+++H
  Cucsa.114380.1 221 CPFHLKTGACRFGQRCSRIH 240
                     *******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.042215243IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-5221240IPR000571Zinc finger, CCCH-type
PRINTSPR018484.5E-13221240IPR009145U2 auxiliary factor small subunit
PRINTSPR018484.5E-13240260IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEELELIGEE EEEVKPCSVE NLCRKEKRKA LKKIKRKQLR KELALKRLQE EEVRLNDPEE  60
QRRIQLMELE EEERSERERK LFEERERAWM EAMELKKKKM AEEEEEEQQR RALEEESTPR  120
EAENENEFNE EDGWEYIEGP AEIIWKGEEI ILKKKLIKVP KKSVEPEKSF EDAHRPTSNP  180
LPPQSEAFTD YKNTPISTKQ VIEDVASQVP NFGTEQDKSH CPFHLKTGAC RFGQRCSRIH  240
FYPEKSCTLL IKNMYNGPGL AWEQDEGLEV C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818581e-171LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132601e-171LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134259.10.0PREDICTED: zinc finger CCCH domain-containing protein 5
SwissprotQ9SY741e-85C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A1S3BUH01e-139A0A1S3BUH0_CUCME; zinc finger CCCH domain-containing protein 5
STRINGXP_004134259.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-49C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]