PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.111520.1

Common Name

Csa_1G025040, LOC105434593

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WOX

Protein Properties

Length: 335aa MW: 39122.4 Da PI: 8.4505

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.111520.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.8	1.4e-21	91	150	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ Cucsa.111520.1 91 SRWNPTVEQLRILEELYRRgTRTPSADQIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 150 8***************99************************************97 PP
2	Wus_type_Homeobox	116.6	1.1e-37	89	152	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt eQ++iLeely++G+rtP++++iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+ Cucsa.111520.1 89 SSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 152 579***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.4E-5	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-12	90	155	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-19	91	150	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-8	91	150	IPR009057	Homeodomain-like
CDD	cd00086	4.16E-5	92	152	No hit	No description
PROSITE profile	PS50071	10.738	96	151	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MWTLGYDDNG GEFCFSEATA FHGARKLRPL VPRPLLSLRA NGRRPNFSSQ YYHIGNVLDE 60 ERKRDQYLLN NEKSSSSSST TSSTPIVVSS SRWNPTVEQL RILEELYRRG TRTPSADQIQ 120 HITAQLRRFG KIEGKNVFYW FQNHKARERQ KRRRQTAADQ TKYSEREKEE YEIEETKTKC 180 RWPGTPTPPS TATLLSQECT ETQRRRTKLV ELEEEEEEET RRESVERDET WNCQLINPTR 240 KTQHLNSVVE SHNEDRGHNV VIDDINDGDK DSKAMTLQLF PLRSTKFYKY DGEREGRRDG 300 RSRSEIMSNS DVTKSFTLSP SCSFQFFEFL PLKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-137	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-137	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649155.1	0.0	PREDICTED: WUSCHEL-related homeobox 1
TrEMBL	A0A0A0LSV4	0.0	A0A0A0LSV4_CUCSA; Uncharacterized protein
STRING	XP_004166032.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-38	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	Cucsa.111520.1
Entrez Gene	105434593

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]