PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.109250.1
Common NameCsa_2G250430, LOC101207039
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 181aa    MW: 19762.4 Da    PI: 7.0722
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.109250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.4e-09343438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +C+ ++++e++ fC +++  lC+ C  ++H+       H+
  Cucsa.109250.1  3 IRCDVCDKEEASVFCPSDEAALCAPCDRQIHRAnklasqHN 43
                    58*****************************7667777776 PP
2zf-B_box23.71e-076098238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    +e+ C+ ++  ++ lfC++++  lC++C   +H    Ht
  Cucsa.109250.1 60 SEPLCDICQIRRAFLFCREDRAILCRECDIPIHDTseHT 98
                    5899*****999********************9546765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
PfamPF006435.4E-7344IPR000315B-box-type zinc finger
CDDcd000212.81E-6335No hitNo description
SMARTSM003361.9E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.9459106IPR000315B-box-type zinc finger
SMARTSM003362.5E-1159106IPR000315B-box-type zinc finger
PfamPF006436.4E-761101IPR000315B-box-type zinc finger
CDDcd000215.96E-762106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKIRCDVCDK EEASVFCPSD EAALCAPCDR QIHRANKLAS QHNRFSLLHS SASASAAATS  60
EPLCDICQIR RAFLFCREDR AILCRECDIP IHDTSEHTQK HSRFLLTGVK VSPSPATSSS  120
CSSSVASSGE ENEGSLKKCS RKRSKMGFSK GLVISEYLES LPGWCVEEFL DSSSSPHLFL  180
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150071.11e-128PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ71e-54BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0A0LIV61e-126A0A0A0LIV6_CUCSA; Uncharacterized protein
STRINGXP_004165125.11e-126(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-50salt tolerance homolog2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  5. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  6. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  7. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  8. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  9. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]