PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.107610.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 289aa    MW: 32726.8 Da    PI: 5.5535
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.107610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-366962101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++f+v+++  fak++LpkyFkh+nf+SF+RQLn+YgF+kv +++         weF+++ F+kgkk+ll++
  Cucsa.107610.1   6 FLTKTYQLVDDRSIDHVISWNDDGSTFIVWNTMAFAKDLLPKYFKHNNFTSFLRQLNTYGFRKVVSDR---------WEFANECFRKGKKQLLCE 91 
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Cucsa.107610.1  92 IQRRK 96 
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-56295IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-37395IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.03E-33395IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-19629IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-31695IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-194456IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404569IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195769IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
SVPTPFLTKT YQLVDDRSID HVISWNDDGS TFIVWNTMAF AKDLLPKYFK HNNFTSFLRQ  60
LNTYGFRKVV SDRWEFANEC FRKGKKQLLC EIQRRKLVGP VPSTASNAAV VTTVGASAIP  120
SVQVLTLTGN SSGEEQVISS DETPTRALAE LIDENDRLRR EKVQLTEQLD EVKSLCNNIF  180
SLMSSFVESQ FKNSFKVRES VLESAKSLDL FPVKRPAGEE GTAEVKEEEE ERNQIGAKRA  240
REYREGATER AEDDTTLRLQ PPDRWVILSS SDERCRESSP QKVGIWHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-2519525129Heat shock factor protein 1
5d5v_B8e-2519525129Heat shock factor protein 1
5d5v_D8e-2519525129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140783.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-67HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0A0L6G80.0A0A0A0L6G8_CUCSA; Uncharacterized protein
STRINGXP_004140783.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-67heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]