PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.106490.1 | ||||||||
Common Name | Csa_4G046650, LOC101217763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 27057.6 Da PI: 9.1212 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 131 | 165 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Cucsa.106490.1 131 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 165 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.89 | 125 | 161 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.0E-20 | 125 | 177 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-14 | 128 | 175 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.9E-17 | 129 | 165 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.34E-14 | 130 | 162 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 131 | 156 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.9E-18 | 131 | 165 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MMHHYGGGGG GSASSFSVFL SVPNHGAADM YSSSTNYASS SSSPSSVDCT LSLGTPSTRS 60 SEFDGDKRAA AAAARNHHRR SAGSYVSNFC WDLLHPKHKT SGRGGGGGGA SNNNINAAVS 120 NGGDPLLARR CANCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRAAAA TVNSSVAESN 180 HHHHHHHHPM FNGSYTNSNT WVPQQLPATT QKHPCLSAAI GNEDVGPENG ISFLSWRLNV 240 ANTDHRPTLV HDFTR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 1e-134 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 1e-134 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146553.2 | 0.0 | PREDICTED: GATA transcription factor 18-like | ||||
TrEMBL | A0A0A0KY15 | 0.0 | A0A0A0KY15_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146553.1 | 1e-166 | (Cucumis sativus) | ||||
STRING | XP_004171538.1 | 1e-166 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4105 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 7e-36 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.106490.1 |
Entrez Gene | 101217763 |
Publications ? help Back to Top | |||
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