PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.105540.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 715aa MW: 83106.9 Da PI: 8.9056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.105540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.4e-22	57	140	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+ trtgC a+++++++++++w+v ++++eHnH l Cucsa.105540.1 57 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKDTRTGCPAMIRMRLMDSQRWRVLEVSTEHNHLL 140 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-19	57	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-29	259	352	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	546	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-4	556	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MEPSLTSEQS SHVEHSDNRK EVDEDAPISE LGGHHGRKEF VVPAVGMEFE SYEDAYNYYN 60 CYAKEVGFRV RVKNSWFKRN SREKYGAVLC CSSQGFKRIK DVNRLRKDTR TGCPAMIRMR 120 LMDSQRWRVL EVSTEHNHLL GSKIYKSMKK MNGGAKRKMQ LSSDADDRTI KLYRALVIDA 180 GGSGTSDSSV KKIRIFPDHP DHLNLKKGDS QAIYNYLCRM QLTNPNFYYL TDLNDEGRLR 240 NMIWVDARSR AACAFFGDVV CFDNSYLSNK FEIPLVAFVG INHHGQSVLL GCGLLAGETT 300 ESYTWLFRAW LSCMLGRSPQ TIITDRCQHL QTAIAEVFPK SQHRFGLSFI MKKVPEKLGG 360 LRNYDAIRKA FNKAVYETLK VIEFDSAWRF MIQRFGIGDH EWLRSVFEDR GRWAPVYLKD 420 TFFAGMSSMR RGEKLNPFFD KYVHKQTPLK EFLDKYELAL QKKYKEETSA DMESRNSSPT 480 LKTRCSFELQ LSKVFTREIF TKFQFEVEEM YSCFSTTQLQ VDGPLVIFLV KERVVSDGNR 540 REIREYEVLY NRTAGEVRCI CSCFNFYGYL CRHALCVLNF NGVEEIPSRY ILSRWKKDYK 600 RLYVSDHETN LSDDTERVQW FNQLYKSALQ VVEEGAISLD HYKAALQAFE ESLSKRVKIV 660 ISNEREIKIS SEAQLFLHFG GIFKKEGKER SESPEFQSLW REFCKAHLPQ AWRS*

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MEPSLTSEQS SHVEHSDNRK EVDEDAPISE LGGHHGRKEF VVPAVGMEFE SYEDAYNYYN  60
CYAKEVGFRV RVKNSWFKRN SREKYGAVLC CSSQGFKRIK DVNRLRKDTR TGCPAMIRMR  120
LMDSQRWRVL EVSTEHNHLL GSKIYKSMKK MNGGAKRKMQ LSSDADDRTI KLYRALVIDA  180
GGSGTSDSSV KKIRIFPDHP DHLNLKKGDS QAIYNYLCRM QLTNPNFYYL TDLNDEGRLR  240
NMIWVDARSR AACAFFGDVV CFDNSYLSNK FEIPLVAFVG INHHGQSVLL GCGLLAGETT  300
ESYTWLFRAW LSCMLGRSPQ TIITDRCQHL QTAIAEVFPK SQHRFGLSFI MKKVPEKLGG  360
LRNYDAIRKA FNKAVYETLK VIEFDSAWRF MIQRFGIGDH EWLRSVFEDR GRWAPVYLKD  420
TFFAGMSSMR RGEKLNPFFD KYVHKQTPLK EFLDKYELAL QKKYKEETSA DMESRNSSPT  480
LKTRCSFELQ LSKVFTREIF TKFQFEVEEM YSCFSTTQLQ VDGPLVIFLV KERVVSDGNR  540
REIREYEVLY NRTAGEVRCI CSCFNFYGYL CRHALCVLNF NGVEEIPSRY ILSRWKKDYK  600
RLYVSDHETN LSDDTERVQW FNQLYKSALQ VVEEGAISLD HYKAALQAFE ESLSKRVKIV  660
ISNEREIKIS SEAQLFLHFG GIFKKEGKER SESPEFQSLW REFCKAHLPQ AWRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681804	0.0	LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136089.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S3CEG3	0.0	A0A1S3CEG3_CUCME; protein FAR1-RELATED SEQUENCE 6
STRING	XP_004136089.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Cucsa.105540.1

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]