PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.105270.1
Common NameCsa_7G433210, LOC101205166
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 285aa    MW: 31981.9 Da    PI: 9.0574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.105270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-09105126425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     + Cr f+r   C yGd+C+F H
  Cucsa.105270.1 105 KVCRLFQRRKKCAYGDQCRFLH 126
                     68******************** PP
2zf-CCCH314.2e-10186211227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k ++C  ++ tG C+yG+ C+FaHg+
  Cucsa.105270.1 186 KSRPCYPWQTTGRCPYGAGCRFAHGE 211
                     679*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-4101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7103130IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7105126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-7105128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-9182215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13185216IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4186211IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7186211IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSAPNRFVPE ARGNWPLLPP PYPDPRNQSF YRPTMSGVVS SWRMPSNFGI PPWNNWNIGY  60
EHEFGRSYTP GFNDTRRMLP SGPGIEFREG QLSERWNVDN SNEMKVCRLF QRRKKCAYGD  120
QCRFLHEIPD KTRDSGSSSQ NYEVSTVAFG HVMDRGSGFD QLEEVRSKVQ TKVVVRGEIP  180
KPLIAKSRPC YPWQTTGRCP YGAGCRFAHG EAELQKLEPC NASQRGSVGG VSGTATTTAA  240
VEAGLRSSRE IGTDCKNKGP RINQFFESKE SKKLIGIYAD WLED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135841.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
RefseqXP_011659533.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
TrEMBLA0A0A0KBW40.0A0A0A0KBW4_CUCSA; Uncharacterized protein
STRINGXP_004158772.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2472233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-17C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]