PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.103470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 33844.8 Da PI: 6.9041 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl Cucsa.103470.1 14 KGPWSPEEDAKLKAYIDQFGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Cucsa.103470.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.112 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.68E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.66E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.666 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.00E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID QFGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QQQAVAARRI PPLKKDDFDK NFNNIIHPSS SLNLNNYEAP YIPNLSTSTQ DHQVRDLILK 180 MGGNPMENQN PLLFQSSNFG ELNMEFGASN DGIFHGSVDQ NSSGGGEFGD PIMLENFENG 240 LVEDFNNYGM MPSSSTSGES SYSLGEISSL GFNYSDFEAS QHQHHHHVIA PAFAHQSTHY 300 SLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT885085 | 0.0 | KT885085.1 Cucumis sativus cultivar TH169 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. | |||
GenBank | KT885086 | 0.0 | KT885086.1 Cucumis sativus cultivar WDSGD 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. | |||
GenBank | KT885087 | 0.0 | KT885087.1 Cucumis sativus cultivar WFEJ 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. | |||
GenBank | KT885088 | 0.0 | KT885088.1 Cucumis sativus cultivar WJE F11 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. | |||
GenBank | KT885089 | 0.0 | KT885089.1 Cucumis sativus cultivar TH118FLM 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657912.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1S3B0P9 | 0.0 | A0A1S3B0P9_CUCME; transcription factor RAX2 | ||||
STRING | XP_008440439.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 9e-78 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.103470.1 |