PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.101120.1
Common NameCsa_6G484540
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 482aa    MW: 55233.3 Da    PI: 4.616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.101120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1971.2e-601154152299
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lLl++Aea++++++ l+++l+++l++l     g +++++la +ft++L+ + ++     y++l++ ++ + +  ++++a+++++++sP++kf+
  Cucsa.101120.1 115 TDLLLAAAEAIEAQNHVLVSNLIEKLKNLlLYDMGsSSFNQLAWFFTQGLHYKTVD-----YNILAAHHQIQIKNYNSMSAFQMLQQLSPYIKFA 204
                     689*************************9644445599******************.....88888888888889999***************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea+ege+++HiiDfdi++G+QWp+L+  La++ e   slR+T++++ ++++++ +e+tg+rL++fA+++++pf f+ +  ++ + +
  Cucsa.101120.1 205 HFTANQAILEAAEGEKMIHIIDFDIMEGIQWPPLMADLAAK-EHVCSLRLTAIVQDNENERKIIEQTGRRLSEFAKSINLPFIFDQMGIEKADRF 298
                     ****************************************8.6679*********9999***************************866666555 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdslea 273
                       ee++v  gE+++ n++   h++l  s +  s+ + +L+ v +lsPk vv+ve+e  + +++          sF+e f+ea++++sal dsl  
  Cucsa.101120.1 299 --EEIQVM-GETVIGNCSGIFHHIL--SYENLSKFEIFLDGVSKLSPKCVVLVEEElFNVTKQlglggpqptmSFVEFFFEAFHHFSALSDSLLR 388
                     ..888765.9**************9..555555589********************54557778999999999********************54 PP

            GRAS 274 klpr..eseerikvErellgreivnvva 299
                      ++   e+  +++++++ lg +i + v+
  Cucsa.101120.1 389 CFSGvyENGFKQVMDEF-LGTRILDSVT 415
                     44331134556666666.8888888775 PP
2GRAS22.21.5e-07421468325373
            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +++p+++++ +qak+l++ + +d + v++e+  l l+Wk+rpL +++ W
  Cucsa.101120.1 421 NKIPFTSFNCSQAKYLISLFRGD-FWVQHEKCNLSLCWKSRPLCTATIW 468
                     5689999**************88.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.73488481IPR005202Transcription factor GRAS
PfamPF035144.2E-58115415IPR005202Transcription factor GRAS
PfamPF035145.2E-5421468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEFFTNYNYF SSPETFFHTH EGNSCSSLSE NSSQNSFQEG SFLEYDDQNF LQFDPIDYNP  60
EDFLAITSID PQNIQESSNH SGHVEEEDHE EEQEKSNNII FKGIQAELME EESLTDLLLA  120
AAEAIEAQNH VLVSNLIEKL KNLLLYDMGS SSFNQLAWFF TQGLHYKTVD YNILAAHHQI  180
QIKNYNSMSA FQMLQQLSPY IKFAHFTANQ AILEAAEGEK MIHIIDFDIM EGIQWPPLMA  240
DLAAKEHVCS LRLTAIVQDN ENERKIIEQT GRRLSEFAKS INLPFIFDQM GIEKADRFEE  300
IQVMGETVIG NCSGIFHHIL SYENLSKFEI FLDGVSKLSP KCVVLVEEEL FNVTKQLGLG  360
GPQPTMSFVE FFFEAFHHFS ALSDSLLRCF SGVYENGFKQ VMDEFLGTRI LDSVTQFPCY  420
NKIPFTSFNC SQAKYLISLF RGDFWVQHEK CNLSLCWKSR PLCTATIWVP KKKKNKSETN  480
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3112247127381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148670.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A0A0KKU80.0A0A0A0KKU8_CUCSA; Uncharacterized protein
STRINGXP_004165446.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-33GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]