PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.101030.9

Common Name

Csa_6G483460, LOC101208018

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 752aa MW: 83224.9 Da PI: 8.4241

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101030.9	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	163	183	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ffa+ GtC+ G +CkF+H Cucsa.101030.9 163 TCKFFAA-GTCRNGKNCKFSHH 183 69999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.6E-7	36	63	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0012	37	63	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	37	64	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	39	62	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	96	122	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	96	123	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.69	158	185	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	159	184	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	161	183	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-5	163	183	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-4	164	183	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MGRSRSRSWS RSRSRSRSPH SFKRDSAFHD RNRNRSRVST QLCREFVSGR CRRGNGCQFL 60 HQDNQIMDDS WDSRNRKGGR SLRSTPHDFR DYPRSGRSAA QCTDFVKGRC HRGASCKYPH 120 DSAFHDLSRG SPNDISRDRE NDRSKEAYFS RGEREPGNSS LVTCKFFAAG TCRNGKNCKF 180 SHHSQPRASP ERKSSTDRWE QDPFSDGRER LWDGSKSSEL ASASDFTQLR EDKGEQIASQ 240 EPSYTWASEQ KWVHGLNNES KTQWDQTVGV KAVQGNKNDT ILSKAEDTGG CIGTSDPRGH 300 RKWPSDDMEM SPDWHYPVQP SNHVVKSDCN IVPDSGSKTS IALATLSHAI VQEALAKKQD 360 IAIEPITADN THFRQNLNLT KDVTIASAFN DKITMDKTIA SHAEGNPSSN TVLVQRMAYH 420 TDHPGGTVMN PKVSDGNFRV KQKEEDGSVP GINSGTTIAP NIVTSEQITQ LTNLSVSLAQ 480 YFGNVQPLPQ IYNSLNTQSV SETASFSYSD ASTGALGLPM KSGPVVESSK QHDSALCNSL 540 ELKKLEVTKT PSDCLPNSAG QKIATEVKDE VQMPNLPLSS DPRDKVGISA KETFHGSDAI 600 NHAKLATEGE AIKEKNGDGD NENKTDPEDS QENDTTENAN GNDGVHDKKK SKDAKGIRAF 660 KFALVEFVKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDHYLSFS 720 KSKLTKLVQG NAHTQDPACS YVFLSPNKYL E*

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MGRSRSRSWS RSRSRSRSPH SFKRDSAFHD RNRNRSRVST QLCREFVSGR CRRGNGCQFL  60
HQDNQIMDDS WDSRNRKGGR SLRSTPHDFR DYPRSGRSAA QCTDFVKGRC HRGASCKYPH  120
DSAFHDLSRG SPNDISRDRE NDRSKEAYFS RGEREPGNSS LVTCKFFAAG TCRNGKNCKF  180
SHHSQPRASP ERKSSTDRWE QDPFSDGRER LWDGSKSSEL ASASDFTQLR EDKGEQIASQ  240
EPSYTWASEQ KWVHGLNNES KTQWDQTVGV KAVQGNKNDT ILSKAEDTGG CIGTSDPRGH  300
RKWPSDDMEM SPDWHYPVQP SNHVVKSDCN IVPDSGSKTS IALATLSHAI VQEALAKKQD  360
IAIEPITADN THFRQNLNLT KDVTIASAFN DKITMDKTIA SHAEGNPSSN TVLVQRMAYH  420
TDHPGGTVMN PKVSDGNFRV KQKEEDGSVP GINSGTTIAP NIVTSEQITQ LTNLSVSLAQ  480
YFGNVQPLPQ IYNSLNTQSV SETASFSYSD ASTGALGLPM KSGPVVESSK QHDSALCNSL  540
ELKKLEVTKT PSDCLPNSAG QKIATEVKDE VQMPNLPLSS DPRDKVGISA KETFHGSDAI  600
NHAKLATEGE AIKEKNGDGD NENKTDPEDS QENDTTENAN GNDGVHDKKK SKDAKGIRAF  660
KFALVEFVKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDHYLSFS  720
KSKLTKLVQG NAHTQDPACS YVFLSPNKYL E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657760.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X3
TrEMBL	A0A0A0KF74	0.0	A0A0A0KF74_CUCSA; Uncharacterized protein
STRING	XP_004148674.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-09	C3H family protein

Link Out ? help Back to Top
Phytozome	Cucsa.101030.9
Entrez Gene	101208018

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]