PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.101030.8

Common Name

Csa_6G483460, LOC101208018

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 761aa MW: 84429.2 Da PI: 8.2255

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101030.8	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	172	192	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ffa+ GtC+ G +CkF+H Cucsa.101030.8 172 TCKFFAA-GTCRNGKNCKFSHH 192 69999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.7E-7	45	72	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0012	46	72	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	46	73	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	48	71	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	105	132	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	105	131	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.69	167	194	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	168	193	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	170	192	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-5	172	192	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-4	173	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MIWQEGFQEW GRSRSRSWSR SRSRSRSPHS FKRDSAFHDR NRNRSRVSTQ LCREFVSGRC 60 RRGNGCQFLH QDNQIMDDSW DSRNRKGGRS LRSTPHDFRD YPRSGRSAAQ CTDFVKGRCH 120 RGASCKYPHD SAFHDLSRGS PNDISRDREN DRSKEAYFSR GEREPGNSSL VTCKFFAAGT 180 CRNGKNCKFS HHSQPRASPE RKSSTDRWEQ DPFSDGRERL WDGSKSSELA SASDFTQLRE 240 DKGEQIASQE PSYTWASEQK WVHGLNNESK TQWDQTVGVK AVQGNKNDTI LSKAEDTGGC 300 IGTSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKSDCNI VPDSGSKTSI ALATLSHAIV 360 QEALAKKQDI AIEPITADNT HFRQNLNLTK DVTIASAFND KITMDKTIAS HAEGNPSSNT 420 VLVQRMAYHT DHPGGTVMNP KVSDGNFRVK QKEEDGSVPG INSGTTIAPN IVTSEQITQL 480 TNLSVSLAQY FGNVQPLPQI YNSLNTQSVS ETASFSYSDA STGALGLPMK SGPVVESSKQ 540 HDSALCNSLE LKKLEVTKTP SDCLPNSAGQ KIATEVKDEV QMPNLPLSSD PRDKVGISAK 600 ETFHGSDAIN HAKLATEGEA IKEKNGDGDN ENKTDPEDSQ ENDTTENANG NDGVHDKKKS 660 KDAKGIRAFK FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGTL QGGHIPQTQE 720 KIDHYLSFSK SKLTKLVQGN AHTQDPACSY VFLSPNKYLE *

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MIWQEGFQEW GRSRSRSWSR SRSRSRSPHS FKRDSAFHDR NRNRSRVSTQ LCREFVSGRC  60
RRGNGCQFLH QDNQIMDDSW DSRNRKGGRS LRSTPHDFRD YPRSGRSAAQ CTDFVKGRCH  120
RGASCKYPHD SAFHDLSRGS PNDISRDREN DRSKEAYFSR GEREPGNSSL VTCKFFAAGT  180
CRNGKNCKFS HHSQPRASPE RKSSTDRWEQ DPFSDGRERL WDGSKSSELA SASDFTQLRE  240
DKGEQIASQE PSYTWASEQK WVHGLNNESK TQWDQTVGVK AVQGNKNDTI LSKAEDTGGC  300
IGTSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKSDCNI VPDSGSKTSI ALATLSHAIV  360
QEALAKKQDI AIEPITADNT HFRQNLNLTK DVTIASAFND KITMDKTIAS HAEGNPSSNT  420
VLVQRMAYHT DHPGGTVMNP KVSDGNFRVK QKEEDGSVPG INSGTTIAPN IVTSEQITQL  480
TNLSVSLAQY FGNVQPLPQI YNSLNTQSVS ETASFSYSDA STGALGLPMK SGPVVESSKQ  540
HDSALCNSLE LKKLEVTKTP SDCLPNSAGQ KIATEVKDEV QMPNLPLSSD PRDKVGISAK  600
ETFHGSDAIN HAKLATEGEA IKEKNGDGDN ENKTDPEDSQ ENDTTENANG NDGVHDKKKS  660
KDAKGIRAFK FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGTL QGGHIPQTQE  720
KIDHYLSFSK SKLTKLVQGN AHTQDPACSY VFLSPNKYLE *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657760.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X3
TrEMBL	A0A0A0KF74	0.0	A0A0A0KF74_CUCSA; Uncharacterized protein
STRING	XP_004148674.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-09	C3H family protein

Link Out ? help Back to Top
Phytozome	Cucsa.101030.8
Entrez Gene	101208018

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]