PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.101030.6

Common Name

Csa_6G483460, LOC101208018

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 767aa MW: 84992 Da PI: 8.4742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101030.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.2e-07	178	198	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ffa+ GtC+ G +CkF+H Cucsa.101030.6 178 TCKFFAA-GTCRNGKNCKFSHH 198 69999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.7E-7	51	78	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0012	52	78	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	52	79	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	54	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	111	137	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	111	138	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.69	173	200	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	174	199	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	176	198	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-5	178	198	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.8E-4	179	198	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MDAVHFKHCK FNLLNVGRSR SRSWSRSRSR SRSPHSFKRD SAFHDRNRNR SRVSTQLCRE 60 FVSGRCRRGN GCQFLHQDNQ IMDDSWDSRN RKGGRSLRST PHDFRDYPRS GRSAAQCTDF 120 VKGRCHRGAS CKYPHDSAFH DLSRGSPNDI SRDRENDRSK EAYFSRGERE PGNSSLVTCK 180 FFAAGTCRNG KNCKFSHHSQ PRASPERKSS TDRWEQDPFS DGRERLWDGS KSSELASASD 240 FTQLREDKGE QIASQEPSYT WASEQKWVHG LNNESKTQWD QTVGVKAVQG NKNDTILSKA 300 EDTGGCIGTS DPRGHRKWPS DDMEMSPDWH YPVQPSNHVV KSDCNIVPDS GSKTSIALAT 360 LSHAIVQEAL AKKQDIAIEP ITADNTHFRQ NLNLTKDVTI ASAFNDKITM DKTIASHAEG 420 NPSSNTVLVQ RMAYHTDHPG GTVMNPKVSD GNFRVKQKEE DGSVPGINSG TTIAPNIVTS 480 EQITQLTNLS VSLAQYFGNV QPLPQIYNSL NTQSVSETAS FSYSDASTGA LGLPMKSGPV 540 VESSKQHDSA LCNSLELKKL EVTKTPSDCL PNSAGQKIAT EVKDEVQMPN LPLSSDPRDK 600 VGISAKETFH GSDAINHAKL ATEGEAIKEK NGDGDNENKT DPEDSQENDT TENANGNDGV 660 HDKKKSKDAK GIRAFKFALV EFVKELLKPT WKEGHISKDV YKTIVKKVVD KVTGTLQGGH 720 IPQTQEKIDH YLSFSKSKLT KLVQGNAHTQ DPACSYVFLS PNKYLE*

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MDAVHFKHCK FNLLNVGRSR SRSWSRSRSR SRSPHSFKRD SAFHDRNRNR SRVSTQLCRE  60
FVSGRCRRGN GCQFLHQDNQ IMDDSWDSRN RKGGRSLRST PHDFRDYPRS GRSAAQCTDF  120
VKGRCHRGAS CKYPHDSAFH DLSRGSPNDI SRDRENDRSK EAYFSRGERE PGNSSLVTCK  180
FFAAGTCRNG KNCKFSHHSQ PRASPERKSS TDRWEQDPFS DGRERLWDGS KSSELASASD  240
FTQLREDKGE QIASQEPSYT WASEQKWVHG LNNESKTQWD QTVGVKAVQG NKNDTILSKA  300
EDTGGCIGTS DPRGHRKWPS DDMEMSPDWH YPVQPSNHVV KSDCNIVPDS GSKTSIALAT  360
LSHAIVQEAL AKKQDIAIEP ITADNTHFRQ NLNLTKDVTI ASAFNDKITM DKTIASHAEG  420
NPSSNTVLVQ RMAYHTDHPG GTVMNPKVSD GNFRVKQKEE DGSVPGINSG TTIAPNIVTS  480
EQITQLTNLS VSLAQYFGNV QPLPQIYNSL NTQSVSETAS FSYSDASTGA LGLPMKSGPV  540
VESSKQHDSA LCNSLELKKL EVTKTPSDCL PNSAGQKIAT EVKDEVQMPN LPLSSDPRDK  600
VGISAKETFH GSDAINHAKL ATEGEAIKEK NGDGDNENKT DPEDSQENDT TENANGNDGV  660
HDKKKSKDAK GIRAFKFALV EFVKELLKPT WKEGHISKDV YKTIVKKVVD KVTGTLQGGH  720
IPQTQEKIDH YLSFSKSKLT KLVQGNAHTQ DPACSYVFLS PNKYLE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657760.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X3
TrEMBL	A0A0A0KF74	0.0	A0A0A0KF74_CUCSA; Uncharacterized protein
STRING	XP_004148674.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-09	C3H family protein

Link Out ? help Back to Top
Phytozome	Cucsa.101030.6
Entrez Gene	101208018

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]