PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.101030.5 | ||||||||
Common Name | Csa_6G483460, LOC101208018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 877aa MW: 97384.2 Da PI: 8.2625 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.3e-07 | 300 | 320 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ffa+ GtC+ G +CkF+H Cucsa.101030.5 300 TCKFFAA-GTCRNGKNCKFSHH 320 6**9999.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-7 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 176 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.61 | 233 | 259 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.69 | 295 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 296 | 321 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 298 | 320 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-5 | 300 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MSGSGRKRTS KWDLREDSHV ETDIAQEHGW PGKESRPGWI SPELAGDDGS KWSGMETTNG 60 ISKPKQDWGL LLEEPFPGTR ASHKEDYTSK GYNKDLEGTA EWDADDKSYS TRMSPGLDEW 120 RRHRSSLSDR NDGSRSVRGR SRSRSWSRSR SRSRSPHSFK RDSAFHDRNR NRSRVSTQLC 180 REFVSGRCRR GNGCQFLHQD NQIMDDSWDS RNRKGGRSLR STPHDFRDYP RSGRSAAQCT 240 DFVKGRCHRG ASCKYPHDSA FHDLSRGSPN DISRDRENDR SKEAYFSRGE REPGNSSLVT 300 CKFFAAGTCR NGKNCKFSHH SQPRASPERK SSTDRWEQDP FSDGRERLWD GSKSSELASA 360 SDFTQLREDK GEQIASQEPS YTWASEQKWV HGLNNESKTQ WDQTVGVKAV QGNKNDTILS 420 KAEDTGGCIG TSDPRGHRKW PSDDMEMSPD WHYPVQPSNH VVKSDCNIVP DSGSKTSIAL 480 ATLSHAIVQE ALAKKQDIAI EPITADNTHF RQNLNLTKDV TIASAFNDKI TMDKTIASHA 540 EGNPSSNTVL VQRMAYHTDH PGGTVMNPKV SDGNFRVKQK EEDGSVPGIN SGTTIAPNIV 600 TSEQITQLTN LSVSLAQYFG NVQPLPQIYN SLNTQSVSET ASFSYSDAST GALGLPMKSG 660 PVVESSKQHD SALCNSLELK KLEVTKTPSD CLPNSAGQKI ATEVKDEVQM PNLPLSSDPR 720 DKVGISAKET FHGSDAINHA KLATEGEAIK EKNGDGDNEN KTDPEDSQEN DTTENANGND 780 GVHDKKKSKD AKGIRAFKFA LVEFVKELLK PTWKEGHISK DVYKTIVKKV VDKVTGTLQG 840 GHIPQTQEKI DHYLSFSKSK LTKLVQAYVD RVQKTA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657755.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_011657756.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
Refseq | XP_011657758.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 | ||||
TrEMBL | A0A0A0KF74 | 0.0 | A0A0A0KF74_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148674.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.101030.5 |
Entrez Gene | 101208018 |
Publications ? help Back to Top | |||
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