PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.101030.2

Common Name

Csa_6G483460, LOC101208018

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 886aa MW: 98346.2 Da PI: 7.8998

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101030.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	297	317	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ffa+ GtC+ G +CkF+H Cucsa.101030.2 297 TCKFFAA-GTCRNGKNCKFSHH 317 69999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.6E-7	170	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0012	171	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	171	198	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	173	196	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	230	256	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	230	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.69	292	319	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	293	318	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	295	317	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-5	297	317	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MSGSGRKRTS KWDLREDSHV ETDIAQEHGW PGKESRPGWI SPELAGDDGS KWSGMETTNG 60 ISKPKQDWGL LLEEPFPGTR ASHKEDYTSK GYNKDLEGTA EWDADDKSYS TRMSPGLDEW 120 RRHRSSLSDR NDGSRGRSRS RSWSRSRSRS RSPHSFKRDS AFHDRNRNRS RVSTQLCREF 180 VSGRCRRGNG CQFLHQDNQI MDDSWDSRNR KGGRSLRSTP HDFRDYPRSG RSAAQCTDFV 240 KGRCHRGASC KYPHDSAFHD LSRGSPNDIS RDRENDRSKE AYFSRGEREP GNSSLVTCKF 300 FAAGTCRNGK NCKFSHHSQP RASPERKSST DRWEQDPFSD GRERLWDGSK SSELASASDF 360 TQLREDKGEQ IASQEPSYTW ASEQKWVHGL NNESKTQWDQ TVGVKAVQGN KNDTILSKAE 420 DTGGCIGTSD PRGHRKWPSD DMEMSPDWHY PVQPSNHVVK SDCNIVPDSG SKTSIALATL 480 SHAIVQEALA KKQDIAIEPI TADNTHFRQN LNLTKDVTIA SAFNDKITMD KTIASHAEGN 540 PSSNTVLVQR MAYHTDHPGG TVMNPKVSDG NFRVKQKEED GSVPGINSGT TIAPNIVTSE 600 QITQLTNLSV SLAQYFGNVQ PLPQIYNSLN TQSVSETASF SYSDASTGAL GLPMKSGPVV 660 ESSKQHDSAL CNSLELKKLE VTKTPSDCLP NSAGQKIATE VKDEVQMPNL PLSSDPRDKV 720 GISAKETFHG SDAINHAKLA TEGEAIKEKN GDGDNENKTD PEDSQENDTT ENANGNDGVH 780 DKKKSKDAKG IRAFKFALVE FVKELLKPTW KEGHISKDVY KTIVKKVVDK VTGTLQGGHI 840 PQTQEKIDHY LSFSKSKLTK LVQGNAHTQD PACSYVFLSP NKYLE*

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MSGSGRKRTS KWDLREDSHV ETDIAQEHGW PGKESRPGWI SPELAGDDGS KWSGMETTNG  60
ISKPKQDWGL LLEEPFPGTR ASHKEDYTSK GYNKDLEGTA EWDADDKSYS TRMSPGLDEW  120
RRHRSSLSDR NDGSRGRSRS RSWSRSRSRS RSPHSFKRDS AFHDRNRNRS RVSTQLCREF  180
VSGRCRRGNG CQFLHQDNQI MDDSWDSRNR KGGRSLRSTP HDFRDYPRSG RSAAQCTDFV  240
KGRCHRGASC KYPHDSAFHD LSRGSPNDIS RDRENDRSKE AYFSRGEREP GNSSLVTCKF  300
FAAGTCRNGK NCKFSHHSQP RASPERKSST DRWEQDPFSD GRERLWDGSK SSELASASDF  360
TQLREDKGEQ IASQEPSYTW ASEQKWVHGL NNESKTQWDQ TVGVKAVQGN KNDTILSKAE  420
DTGGCIGTSD PRGHRKWPSD DMEMSPDWHY PVQPSNHVVK SDCNIVPDSG SKTSIALATL  480
SHAIVQEALA KKQDIAIEPI TADNTHFRQN LNLTKDVTIA SAFNDKITMD KTIASHAEGN  540
PSSNTVLVQR MAYHTDHPGG TVMNPKVSDG NFRVKQKEED GSVPGINSGT TIAPNIVTSE  600
QITQLTNLSV SLAQYFGNVQ PLPQIYNSLN TQSVSETASF SYSDASTGAL GLPMKSGPVV  660
ESSKQHDSAL CNSLELKKLE VTKTPSDCLP NSAGQKIATE VKDEVQMPNL PLSSDPRDKV  720
GISAKETFHG SDAINHAKLA TEGEAIKEKN GDGDNENKTD PEDSQENDTT ENANGNDGVH  780
DKKKSKDAKG IRAFKFALVE FVKELLKPTW KEGHISKDVY KTIVKKVVDK VTGTLQGGHI  840
PQTQEKIDHY LSFSKSKLTK LVQGNAHTQD PACSYVFLSP NKYLE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657759.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A0A0KF74	0.0	A0A0A0KF74_CUCSA; Uncharacterized protein
STRING	XP_004148674.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-09	C3H family protein

Link Out ? help Back to Top
Phytozome	Cucsa.101030.2
Entrez Gene	101208018

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]