PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.101030.10
Common NameCsa_6G483460, LOC101208018
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 686aa    MW: 75360.2 Da    PI: 6.9311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.101030.10genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0797117526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ffa+ GtC+ G +CkF+H 
  Cucsa.101030.10  97 TCKFFAA-GTCRNGKNCKFSHH 117
                      6**9999.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.613056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5353057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6992119IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-493118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-695117IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-597117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-498117IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MDDSWDSRNR KGGRSLRSTP HDFRDYPRSG RSAAQCTDFV KGRCHRGASC KYPHDSAFHD  60
LSRGSPNDIS RDRENDRSKE AYFSRGEREP GNSSLVTCKF FAAGTCRNGK NCKFSHHSQP  120
RASPERKSST DRWEQDPFSD GRERLWDGSK SSELASASDF TQLREDKGEQ IASQEPSYTW  180
ASEQKWVHGL NNESKTQWDQ TVGVKAVQGN KNDTILSKAE DTGGCIGTSD PRGHRKWPSD  240
DMEMSPDWHY PVQPSNHVVK SDCNIVPDSG SKTSIALATL SHAIVQEALA KKQDIAIEPI  300
TADNTHFRQN LNLTKDVTIA SAFNDKITMD KTIASHAEGN PSSNTVLVQR MAYHTDHPGG  360
TVMNPKVSDG NFRVKQKEED GSVPGINSGT TIAPNIVTSE QITQLTNLSV SLAQYFGNVQ  420
PLPQIYNSLN TQSVSETASF SYSDASTGAL GLPMKSGPVV ESSKQHDSAL CNSLELKKLE  480
VTKTPSDCLP NSAGQKIATE VKDEVQMPNL PLSSDPRDKV GISAKETFHG SDAINHAKLA  540
TEGEAIKEKN GDGDNENKTD PEDSQENDTT ENANGNDGVH DKKKSKDAKG IRAFKFALVE  600
FVKELLKPTW KEGHISKDVY KTIVKKVVDK VTGTLQGGHI PQTQEKIDHY LSFSKSKLTK  660
LVQGNAHTQD PACSYVFLSP NKYLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657760.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X3
TrEMBLA0A0A0KF740.0A0A0A0KF74_CUCSA; Uncharacterized protein
STRINGXP_004148674.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-09C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]