PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.100320.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family FAR1
Protein Properties Length: 558aa    MW: 63774.1 Da    PI: 6.9908
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.100320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.37e-15651342490
            FAR1  24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++   +r+ vC+++g+++++kk ++++ r+r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  Cucsa.100320.1  65 SDDDAFERDIVCYRSGYNQPRKKVNVEHPRERKSVRCGCDAKLYLTKEIvdgVSQWYVSQFSNVHNHELL 134
                     46678899**************************************998767789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1264134IPR004330FAR1 DNA binding domain
PfamPF105514.7E-9262312IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MAMKLLANIW IRRQQCPCGD WNCYISCEGE DQASINAEVV KSETVPSQLS LDSVFTPYVG  60
QIFKSDDDAF ERDIVCYRSG YNQPRKKVNV EHPRERKSVR CGCDAKLYLT KEIVDGVSQW  120
YVSQFSNVHN HELLEDDLVR LLPAYRKIQK ADQERILILS KAGFPVNRIL KVLELEKGVQ  180
PGQLPFIEKD VRNFVRTSKK TVDENDALLN EKRENQLLEL LEICKDENGE VENISWAYGD  240
PIRAYSVFGD VVSFETSYHS ITFGLLLGKF VQFMRGKHPQ TILTDLDSGL TDAISIELPN  300
TKHVVCIWHI LSKLSSWFSL PLGNIADFEH QWGPMVAQFG LASDKHIALL YLDRASWPLS  360
FIRSSFLART LTVDFFKSLE VFLKIILSAQ TCLKIFFEQV SNAANSGIQA KEGMQYLHIK  420
TCMPIAQHAQ SILTPYAFSV LQNEIVLSMQ YVATEMGNGS YLLQHYKKMD VERLFEHLGI  480
LCWHSIRALV LKNYFKLPDK CLLLRWRLQN SLGIVDNAHS QGRSEACAQA FHSPAATLLT  540
ESLMSHERFN YVHRELSX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817930.0LN681793.1 Cucumis melo genomic scaffold, anchoredscaffold00066.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658665.10.0PREDICTED: LOW QUALITY PROTEIN: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S3CG550.0A0A1S3CG55_CUCME; Uncharacterized protein
STRINGXP_008462072.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]