PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.096040.1

Common Name

Csa_4G006410, LOC101206573

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 670aa MW: 77316.6 Da PI: 5.7382

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.096040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.6e-21	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ +w+++++el+HnH ++ Cucsa.096040.1 60 FYSCYAKEQGFGVRVSNTWYR-KSKEKYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLIN 142 9*************99997.66779**********99888.....*********************************775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-18	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-22	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.928	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-5	552	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-5	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MDGVSLNTEP VGDEEGDYFE IEGDSVIADY VDQSGIFEGE NPLPPAVGME FESYEDVYYF 60 YSCYAKEQGF GVRVSNTWYR KSKEKYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMDTRRWRI IEVELDHNHL INPTSGKFYK SHKNLGVGTK RLLQLDSVEE VQKVRLFQTV 180 VIDADHNGYL DVDEGEFGNR VDNSNQLKLN KGDALAIEDF LCQAQLTDSN FFYVLDLNEK 240 GSLRNLFWVS SRSRAAYTYF SDVVYMDTSC LANKYQVPLV SIIGVNHHGQ CVLFGCGLLA 300 METVESYIWL FRAWLTSVLG RPPQVIIADQ HEELQIALTD VFPRASHCIS LSDIMRKVPQ 360 KLRGMLEYET IEIAIFRAVY HSLKPEQFDA LWEGMIQQHG LGGHKWLQEL YEHRRQWVPV 420 FMKDTFLAGV LSIVSGDVVP FFFQEYLGEH TSLKQFFEQY DQAIQSHHQL EVLADEDSKN 480 SSLMLESRCY FEAQLCKLYT NEILEKFERE VEGMYCCFNR RKLNAEAPLM TYIVKEHVEM 540 EGSRRDAREF EVSYNESDME VQCNCGLFNS KGYLCRHALS VLTQNGIKEI PAQYILQRWR 600 KDVKRNYILD YSYTTSIDTN SQIHRYDHIY RSIVQVIEEG RKSKEKYGIA VQGIKDILSK 660 LRLGTDTSS*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MDGVSLNTEP VGDEEGDYFE IEGDSVIADY VDQSGIFEGE NPLPPAVGME FESYEDVYYF  60
YSCYAKEQGF GVRVSNTWYR KSKEKYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDTRRWRI IEVELDHNHL INPTSGKFYK SHKNLGVGTK RLLQLDSVEE VQKVRLFQTV  180
VIDADHNGYL DVDEGEFGNR VDNSNQLKLN KGDALAIEDF LCQAQLTDSN FFYVLDLNEK  240
GSLRNLFWVS SRSRAAYTYF SDVVYMDTSC LANKYQVPLV SIIGVNHHGQ CVLFGCGLLA  300
METVESYIWL FRAWLTSVLG RPPQVIIADQ HEELQIALTD VFPRASHCIS LSDIMRKVPQ  360
KLRGMLEYET IEIAIFRAVY HSLKPEQFDA LWEGMIQQHG LGGHKWLQEL YEHRRQWVPV  420
FMKDTFLAGV LSIVSGDVVP FFFQEYLGEH TSLKQFFEQY DQAIQSHHQL EVLADEDSKN  480
SSLMLESRCY FEAQLCKLYT NEILEKFERE VEGMYCCFNR RKLNAEAPLM TYIVKEHVEM  540
EGSRRDAREF EVSYNESDME VQCNCGLFNS KGYLCRHALS VLTQNGIKEI PAQYILQRWR  600
KDVKRNYILD YSYTTSIDTN SQIHRYDHIY RSIVQVIEEG RKSKEKYGIA VQGIKDILSK  660
LRLGTDTSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652996.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0A0KVM3	0.0	A0A0A0KVM3_CUCSA; Uncharacterized protein
STRING	XP_004164334.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Cucsa.096040.1
Entrez Gene	101206573

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]