PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.094440.1 | ||||||||
Common Name | Csa_4G017090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28655.1 Da PI: 6.7259 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.6 | 5.1e-29 | 86 | 173 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Cucsa.094440.1 86 FYNSYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHTHPLSP 173 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-26 | 86 | 173 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEFGVDGDSE VVGNSTLVED SKPLDENETG VSSIERIFDQ DQDEKIIQDS TGRNAILDSV 60 PGLPIVQADE PYVGQEFENE AAAHAFYNSY ATRVGFVIRV SKLSRSRRDG TAIGRALVCN 120 KEGYRMPDKR EKIVRQRAET RVGCRAMILV RKVNSGKWVV TKFVKEHTHP LSPGKARRDC 180 IYDQYPNEHD KIRELSQQLA IEKKRSATYK RHLEVIFEYI EEHNDSLSRK IQHIVDNVKE 240 LESVEQQNHR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 0.0 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152087.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A1S3BY81 | 0.0 | A0A1S3BY81_CUCME; protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | XP_004161594.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-113 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.094440.1 |
Publications ? help Back to Top | |||
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