PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.092430.1 | ||||||||
Common Name | Csa_1G423050, LOC105434494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 256aa MW: 29662.1 Da PI: 6.1756 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 55.8 | 1e-17 | 207 | 256 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+ Wt+eL e+F+ea eqL G+++ +P +il+lm+ Lt+e+v+SHLQ Cucsa.092430.1 207 KKRVSWTKELDEKFIEAYEQL-GEKERVPNNILKLMNDSRLTRENVASHLQ 256 68*******************.99999***********************9 PP | |||||||
2 | Response_reg | 61 | 6.2e-21 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl +d + + ++ l+q+l+k +y +v++ +++ ea++llk+ + +D++++ + mdG+++l+ i e ++p+++v+a++e +++ + + G Cucsa.092430.1 24 VLAIDNNIVCLRYLAQLLKKCQY-KVTASTEAAEAIRLLKDGKrtFDIVITNVVRQYMDGFKILQIIGVEM-DIPVVMVSANEELDTMMRGVVEG 116 7889999****************.***************988888**********************6544.7********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 akd+l Kp+ +el++ Cucsa.092430.1 117 AKDYLIKPVRLQELRN 132 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-30 | 21 | 164 | No hit | No description |
SuperFamily | SSF52172 | 1.71E-27 | 22 | 166 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.1E-16 | 22 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.975 | 23 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.8E-17 | 24 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.59E-16 | 25 | 138 | No hit | No description |
PROSITE profile | PS51294 | 12.982 | 204 | 256 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-12 | 205 | 256 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 205 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-17 | 207 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 209 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEDFDNHIPL KAEEDDQFPI GLKVLAIDNN IVCLRYLAQL LKKCQYKVTA STEAAEAIRL 60 LKDGKRTFDI VITNVVRQYM DGFKILQIIG VEMDIPVVMV SANEELDTMM RGVVEGAKDY 120 LIKPVRLQEL RNIWQHVLRK RLARKSPNRP NLLLLEEQLV LEEEENHNIS TAKRVAINYQ 180 QDYEQSKEIV KLNDGNNVAD DSSSKKKKRV SWTKELDEKF IEAYEQLGEK ERVPNNILKL 240 MNDSRLTREN VASHLQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 2e-37 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 2e-37 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011648496.1 | 0.0 | PREDICTED: two-component response regulator ARR10-like | ||||
TrEMBL | A0A0A0LX87 | 0.0 | A0A0A0LX87_CUCSA; Uncharacterized protein | ||||
STRING | XP_008453705.1 | 2e-98 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19550 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-60 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.092430.1 |
Entrez Gene | 105434494 |
Publications ? help Back to Top | |||
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