PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.089840.1 | ||||||||
Common Name | Csa_3G609250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14572.9 Da PI: 9.9878 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.3 | 1.3e-13 | 12 | 114 | 1 | 94 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 f+k+l++ dv++s grl l k+f++++ g++ ++++ +t++d++gr++++ ++++ ++ yvltk W++F k+n+L g+f+ + + Cucsa.089840.1 12 FVKQLMKTDVTESqGRLALHKEFVTRNlipmfnrGENLKNGISVTVYDSEGREYDMIFKFWTSK-LYVLTKSWNKFYKSNNLTrPGEFISVWMFR 105 89********99989******************9666668899***************999996.89***************8789988654333 PP S.SEE..EE CS B3 87 r.sefelvv 94 + +++l++ Cucsa.089840.1 106 HvVNRKLCF 114 335555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.4E-16 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.04E-15 | 10 | 116 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-16 | 10 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.1E-7 | 12 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-10 | 12 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.629 | 13 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
IQNIIGECSP PFVKQLMKTD VTESQGRLAL HKEFVTRNLI PMFNRGENLK NGISVTVYDS 60 EGREYDMIFK FWTSKLYVLT KSWNKFYKSN NLTRPGEFIS VWMFRHVVNR KLCFAIMRGD 120 AEQP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-119 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-119 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022145065.1 | 1e-41 | putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A0A0LC65 | 9e-88 | A0A0A0LC65_CUCSA; Uncharacterized protein | ||||
STRING | XP_008460492.1 | 3e-70 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 4e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.089840.1 |
Publications ? help Back to Top | |||
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