PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.088250.4 | ||||||||
Common Name | Csa_2G403160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bZIP | ||||||||
Protein Properties | Length: 309aa MW: 35567.5 Da PI: 8.1245 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.8 | 7.5e-11 | 15 | 55 | 3 | 43 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 ++k++rr+++NReAAr+sR RKk ++++Le+ +L + + Cucsa.088250.4 15 DDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEE 55 589***************************85444443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-8 | 13 | 75 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.335 | 15 | 59 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-7 | 16 | 56 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.17E-7 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-8 | 17 | 62 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 20 | 35 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.8E-29 | 102 | 177 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MDHLESSQEM NKPIDDKVQR RLAQNREAAR KSRMRKKVYV QQLETSRLKL AQLEEELERT 60 RQQKGNGCLV DTSHIGFSGL VNPGIAAFEM EYNHWVEEQQ RQINELRKAL QVHTTDIELQ 120 ILVESSLNHY HNLFCMKAKV AKADVFYLMS GVWRSSAERF FLWIGGFRPS ELLNVLKPYL 180 EPLNEQQRAD IHKLQQSSRQ AEDALTQGME KLHQNLSLSI AGDPIGSYIS QMGDGMEKFE 240 ALESFISQPS VCYSFLEQAD HLRQQTLKRM SHLLTTRQAA QGLLALGEYF HRLRVLSSLW 300 ATRPREPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00247 | DAP | Transfer from AT1G77920 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681815 | 1e-141 | LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008. | |||
GenBank | LN713257 | 1e-141 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138645.1 | 0.0 | PREDICTED: transcription factor TGA7-like isoform X1 | ||||
Refseq | XP_011649910.1 | 0.0 | PREDICTED: transcription factor TGA7-like isoform X1 | ||||
Refseq | XP_011649911.1 | 0.0 | PREDICTED: transcription factor TGA7-like isoform X1 | ||||
Swissprot | Q93ZE2 | 1e-127 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | A0A0A0LMH3 | 0.0 | A0A0A0LMH3_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138645.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.6 | 1e-126 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.088250.4 |
Publications ? help Back to Top | |||
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