PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.086660.3

Common Name

Csa_6G426940, LOC101222154

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 174aa MW: 19261.8 Da PI: 9.93

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.086660.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	244.1	2.8e-75	6	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +s+f++vtvrCGhC++llsvn+ + q+++ ++ +++ + +++ + +++ + +++s+++s++ Cucsa.086660.3 6 MASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDS--QQG--HKQQQVNAGDSS--KDRASSSSSTKSTKIG 94 689*************************************************9997..222..222222333332..3333344444555555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l+++ +++ r+pp irPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Cucsa.086660.3 95 SLDSSAERDQHRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGL 164 688999999999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.0E-77	7	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.03E-8	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.6E-5	112	158	IPR009071	High mobility group box domain
CDD	cd01390	6.90E-6	118	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSLDMMASER VCYVHCNFCN TILAVSVPCN SMFTLVTVRC GHCSNLLSVN MGASLQVVPP 60 QDSQQGHKQQ QVNAGDSSKD RASSSSSTKS TKIGSLDSSA ERDQHRIPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKAKNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QTK*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	3e-60	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	3e-60	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140176.1	1e-128	PREDICTED: putative axial regulator YABBY 2
Refseq	XP_011657596.1	1e-128	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	7e-77	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0A0KGY1	1e-127	A0A0A0KGY1_CUCSA; Uncharacterized protein
STRING	XP_004156064.1	1e-128	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.086660.3
Entrez Gene	101222154

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]