PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.083540.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 304aa MW: 35132.2 Da PI: 6.2547

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.083540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.4	1.1e-43	5	140	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l pGfrF Pt+eel+++yL++k+e++ ++++i+ +diy+++PwdLp+ ++ +e++w++F++r++++a+g r++r t++gyWkat Cucsa.083540.1 5 LIPGFRFYPTEEELISFYLQHKLEDDGdddlkQAMDQIIPILDIYNFNPWDLPQyageVCRRDEEQWFYFIPRQESEARGGRPKRLTSTGYWKAT 99 579*******************998777755555679999*******646654445788************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ +v++++++ +g+k+t+vfy+grap+g+kt+W m+ey+ Cucsa.083540.1 100 GSPSHVYCSNNKSIGVKRTMVFYNGRAPNGTKTEWKMNEYK 140 **************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-43	3	186	IPR003441	NAC domain
PROSITE profile	PS51005	45.901	5	186	IPR003441	NAC domain
Pfam	PF02365	2.8E-21	7	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MENYLIPGFR FYPTEEELIS FYLQHKLEDD GDDDLKQAMD QIIPILDIYN FNPWDLPQYA 60 GEVCRRDEEQ WFYFIPRQES EARGGRPKRL TSTGYWKATG SPSHVYCSNN KSIGVKRTMV 120 FYNGRAPNGT KTEWKMNEYK AIAHHRFIND NQPEHHSASN PNPSSSCTTP TIRMRQKFSL 180 CRIYKKSKTL RSFDRRPPPC EPRMVQFAVS TQAATIEPPN FPNEPNLTST TAPLITTISS 240 PDSSSLRDRV DKSSQTTTGE TNINNEVNIV VPMEAAYEPM WDWDLYANYT TCGDLNYQLF 300 YYY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	5	189	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	5	189	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	5	189	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	5	189	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	5	189	20	171	NAC domain-containing protein 19
3swm_B	2e-30	5	189	20	171	NAC domain-containing protein 19
3swm_C	2e-30	5	189	20	171	NAC domain-containing protein 19
3swm_D	2e-30	5	189	20	171	NAC domain-containing protein 19
3swp_A	2e-30	5	189	20	171	NAC domain-containing protein 19
3swp_B	2e-30	5	189	20	171	NAC domain-containing protein 19
3swp_C	2e-30	5	189	20	171	NAC domain-containing protein 19
3swp_D	2e-30	5	189	20	171	NAC domain-containing protein 19
4dul_A	2e-30	5	189	17	168	NAC domain-containing protein 19
4dul_B	2e-30	5	189	17	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681876	1e-144	LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBank	LN713262	1e-144	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143388.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A1S3CHI8	1e-175	A0A1S3CHI8_CUCME; NAC domain-containing protein 90-like
STRING	XP_004143388.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-66	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Cucsa.083540.1