PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.077160.1 | ||||||||
Common Name | Csa_6G344210, LOC101210851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 24519.9 Da PI: 10.3181 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2.1e-18 | 29 | 74 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Cucsa.077160.1 29 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 74 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Cucsa.077160.1 81 RKPFSEEEEERLLGAHRIHGNK-WSLIARLFP-GRTDNAVKNHWHV 124 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.644 | 24 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-30 | 27 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-15 | 28 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-17 | 29 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-27 | 30 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-12 | 32 | 73 | No hit | No description |
PROSITE profile | PS51294 | 21.037 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 81 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.89E-10 | 83 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-21 | 83 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKDSSGDHNN YNNNLHVNYH DQYKSSCPRG HWRPAEDEKL RQLVEQYGAQ NWNSIAEKLQ 60 GRSGKSCRLR WFNQLDPRII RKPFSEEEEE RLLGAHRIHG NKWSLIARLF PGRTDNAVKN 120 HWHVIMARKQ REQSKLCGNK RTYQQFSNLI LNNNQITTQS SSSTTNHHHH HHHHPQLTTT 180 TILVSDYNNN NSNSKDGMVW NFRQGFKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 29 | 129 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681815 | 0.0 | LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144300.2 | 1e-155 | PREDICTED: transcription factor MYB57-like isoform X1 | ||||
Swissprot | Q6R0C4 | 3e-65 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A0A0KGJ9 | 1e-153 | A0A0A0KGJ9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170710.1 | 1e-154 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 9e-67 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.077160.1 |
Entrez Gene | 101210851 |
Publications ? help Back to Top | |||
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