PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.067270.1 | ||||||||
Common Name | Csa_4G310210, LOC101218250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 260aa MW: 31364.8 Da PI: 9.419 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.9 | 5.4e-23 | 29 | 110 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ e+++L+++r +++++++ k++ lW +v++km+++gf+rs +qCk+kw+nl +ryk +++++ k ++ ++p++d+l+ Cucsa.067270.1 29 WSVLETKELLAIRAALDKNFSEMKQNRMLWISVAEKMKAKGFNRSDEQCKCKWKNLVTRYKGCETMDPKA--LKH-QFPFYDDLH 110 9999****************************************************************95..444.79****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.317 | 28 | 85 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 28 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.0E-19 | 28 | 111 | No hit | No description |
CDD | cd12203 | 2.83E-16 | 29 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEDFCDLRRA VFHRIGVNAE AAGDRFPPWS VLETKELLAI RAALDKNFSE MKQNRMLWIS 60 VAEKMKAKGF NRSDEQCKCK WKNLVTRYKG CETMDPKALK HQFPFYDDLH TIFTARMQKN 120 WWVEAENRSG GSKRKANEDP NGDRELENEE KTKTKNGTKK RKWKRDNPEE HERNLKEILK 180 DFVKREMEME REWREAFRVR EEERRLKEEE WRMKMEGIER EKMMMEILWR ENEDKRRERE 240 EARAQKTDAL ISALLTNLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681884 | 0.0 | LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653700.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b isoform X2 | ||||
Swissprot | O80450 | 9e-55 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A0A0KZY4 | 0.0 | A0A0A0KZY4_CUCSA; Uncharacterized protein | ||||
STRING | XP_008464200.1 | 1e-124 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 3e-43 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.067270.1 |
Entrez Gene | 101218250 |
Publications ? help Back to Top | |||
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