PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.061660.2 | ||||||||
Common Name | Csa_5G651640, LOC101210677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 33129.3 Da PI: 8.5048 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Cucsa.061660.2 14 KGAWTKDEDQRLIDYIRLHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ Cucsa.061660.2 67 RGNFTEDEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.791 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.23E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.908 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKD EDQRLIDYIR LHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEDEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLITRG 120 IDPQTHRPLN EPPTTAAALS PRLPYQNHHH HHRRHHHHLT PNDHSSSSSS SLPNIAELPI 180 MKAATNVQSS DPDEEGSGTT TEMDPPLPAA EPTLGVHVKT EVNLELSIGL HPFQAEAVRG 240 SSLGSSAESR LREERRALVR CLCWELGWEK GGECNRNCER TYGWFRASAM GSTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 118 | 7 | 110 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 0.0 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141649.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q38851 | 3e-91 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A0A0KXZ4 | 0.0 | A0A0A0KXZ4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141649.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004162864.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 6e-91 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.061660.2 |
Entrez Gene | 101210677 |
Publications ? help Back to Top | |||
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