PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.058440.2

Common Name

Csa_4G618450, LOC101220527

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 727aa MW: 84008.9 Da PI: 8.5417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.058440.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.9	1.9e-24	93	179	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e++++ ++r+ +tgC+a++++kk++dgkw v+ + eHnHe++p Cucsa.058440.2 93 SFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESTTT----VNPRPCMKTGCNASMHIKKREDGKWFVHGFTREHNHEICP 179 5**************************************998877....9**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-22	93	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.1E-23	261	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.062	541	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.3E-6	543	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.9E-7	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MDIDLELPSS DHERLDVIQG RNDGVNVCQA NGQGKYANSF ARAEHHEEMS IPNAKKSSGE 60 DRMDIINFET DFRIGPFEPK NGLEFESKEE AYSFYREYAR SVGFGITIKA SRRSKKSGKF 120 IDIKIACSRF GSKRESTTTV NPRPCMKTGC NASMHIKKRE DGKWFVHGFT REHNHEICPD 180 DFHHAMKGRN KKPDIAISEK KGLQLALDEG DVLLMLEHFV HMQETNPNFF YAIHFNQEKQ 240 LRNVLWVDAK ARHDYQNFSD VIFFDTYYLT NGYKVPFVPI VGVNHHFQYI LFGGALIGDM 300 ATSSFIWLMK TWLKAVGGRA PRVVLTDQEL SLKESVSDVF PNTLHLFSLW HILRRVPEKL 360 GRTINQNGGF IETLNKCIYR SWTDKEFEKR WWEMIDKFQI REDEWLQLLF DDRKKWVPTY 420 VKNYFLAGMS TLERSGSVIS FFDKYICKET SFKEFIKHSK IFFKDMLELE ANADFETRHQ 480 KPILKSLFTF EKQMATMYTT TMFKKFQLQI LGAASCQVHK QTENGATVTY HIHDLEEHQD 540 FLVAWNKTEM DICCLCRSFE YQGILCRHAI LVFQILGLTS IPHKYILKRW TRSAKVRISE 600 SSNRLHYRVQ RFNNLCKQAI KLGELGSLSQ ETYDIASEAF DEVLKQCAFA KNSTKSFVEI 660 NTLGSVGFVD DEENHGEYMA KSSGKRQMSK KGKVIKQARY KSSEVEVDSG AAALHCFHGS 720 LPGSVR*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MDIDLELPSS DHERLDVIQG RNDGVNVCQA NGQGKYANSF ARAEHHEEMS IPNAKKSSGE  60
DRMDIINFET DFRIGPFEPK NGLEFESKEE AYSFYREYAR SVGFGITIKA SRRSKKSGKF  120
IDIKIACSRF GSKRESTTTV NPRPCMKTGC NASMHIKKRE DGKWFVHGFT REHNHEICPD  180
DFHHAMKGRN KKPDIAISEK KGLQLALDEG DVLLMLEHFV HMQETNPNFF YAIHFNQEKQ  240
LRNVLWVDAK ARHDYQNFSD VIFFDTYYLT NGYKVPFVPI VGVNHHFQYI LFGGALIGDM  300
ATSSFIWLMK TWLKAVGGRA PRVVLTDQEL SLKESVSDVF PNTLHLFSLW HILRRVPEKL  360
GRTINQNGGF IETLNKCIYR SWTDKEFEKR WWEMIDKFQI REDEWLQLLF DDRKKWVPTY  420
VKNYFLAGMS TLERSGSVIS FFDKYICKET SFKEFIKHSK IFFKDMLELE ANADFETRHQ  480
KPILKSLFTF EKQMATMYTT TMFKKFQLQI LGAASCQVHK QTENGATVTY HIHDLEEHQD  540
FLVAWNKTEM DICCLCRSFE YQGILCRHAI LVFQILGLTS IPHKYILKRW TRSAKVRISE  600
SSNRLHYRVQ RFNNLCKQAI KLGELGSLSQ ETYDIASEAF DEVLKQCAFA KNSTKSFVEI  660
NTLGSVGFVD DEENHGEYMA KSSGKRQMSK KGKVIKQARY KSSEVEVDSG AAALHCFHGS  720
LPGSVR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681864	0.0	LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145997.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_011654002.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A0A0KZ94	0.0	A0A0A0KZ94_CUCSA; Uncharacterized protein
STRING	XP_008464680.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Cucsa.058440.2
Entrez Gene	101220527

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]