PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.056150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 164aa MW: 18632.8 Da PI: 6.9361 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 45.8 | 1.2e-14 | 21 | 56 | 20 | 55 |
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYege 55 r+YY+C+ +gCpvkk+ver++edpk+v++tYeg+ Cucsa.056150.1 21 KCRNYYKCSVEGCPVKKRVERDREDPKYVITTYEGQ 56 67********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.4E-6 | 16 | 61 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-11 | 19 | 56 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-13 | 20 | 56 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-9 | 21 | 56 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.94 | 23 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MKTGLFVLIV NLNWLNQPSV KCRNYYKCSV EGCPVKKRVE RDREDPKYVI TTYEGQSIDQ 60 LQRICRLILW FGITTSGFLL CKLKPDEPEI IPSCISEEML HKMSPVGALV PSDEYWTIAF 120 DLDNGSLKFL PIPLESNQRD PNCCCIVVAQ NCILLGTEFT PKR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-168 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-168 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 8e-17 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.056150.1 |