PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.056080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 221aa MW: 25826.3 Da PI: 6.0429 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 71.6 | 1e-22 | 144 | 192 | 3 | 51 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +++++d+ +y +lpi +A+k+L+vc TvLK+iCR+ G++RWP+Rki+s Cucsa.056080.1 144 GRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRS 192 679999*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.587 | 133 | 213 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.0E-20 | 146 | 192 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLAGVHSRKL EIHGRLGMIS HAILEHKPIV NVDNISPQYQ MFDFCEKSCE EIKQFLLQYC 60 LKQILEDYNM IPDPMSNFYD ALCVGIDWFE NLNTDGFFQL SPDNSEDDEM EQPTPDCQNE 120 PPEQPEEQPP RRRPSLAAQR QRTGRMTVND VWEYLHLPIS EASKKLNVCN TVLKKICRRS 180 GLSRWPYRKI RSYERRIAAL RATMNSSYGD TRVRAEAEIE R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 2e-95 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 2e-95 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658444.1 | 1e-162 | PREDICTED: protein RKD2-like | ||||
TrEMBL | A0A1S3BCG6 | 1e-142 | A0A1S3BCG6_CUCME; protein RKD2-like isoform X1 | ||||
STRING | XP_008445526.1 | 1e-143 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7478 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 2e-11 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.056080.1 |