PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.053890.3
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 160aa    MW: 18206.1 Da    PI: 10.1106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.053890.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.7e-32161361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp+G+rF Ptd+elv++yLk+kv + +l++ ++i++vdi+ ++Pw Lp  +   +++ +fFsk+++        +r++  g+Wk+ gk+k +ls+
  Cucsa.053890.3  16 LPVGYRFCPTDQELVSHYLKRKVFHLPLPA-SIIPDVDIFLTDPWALPGDL---KEKRFFFSKQKSF------FRRSAGCGIWKSIGKEKLILSQ 100
                     799***************************.89***************544...3567899887664......6899999**************9 PP

             NAM  96 ..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        ++lvg +ktLvf +    ++++ t+Wvmheyrl
  Cucsa.053890.3 101 epMNQLVGFRKTLVFSESkFCERTSATRWVMHEYRL 136
                     887889**********7625677889********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3711141IPR003441NAC domain
PROSITE profilePS5100537.85316159IPR003441NAC domain
PfamPF023653.8E-2317136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDNISTFVLN GGSIRLPVGY RFCPTDQELV SHYLKRKVFH LPLPASIIPD VDIFLTDPWA  60
LPGDLKEKRF FFSKQKSFFR RSAGCGIWKS IGKEKLILSQ EPMNQLVGFR KTLVFSESKF  120
CERTSATRWV MHEYRLPPSA SPTTPNSTQV KTSLTVDLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-231213611140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818571e-130LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBankLN7132601e-130LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148002.11e-109PREDICTED: NAC domain-containing protein 68-like isoform X2
SwissprotQ9FY932e-37NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0A0LDI31e-108A0A0A0LDI3_CUCSA; Uncharacterized protein
STRINGXP_004148002.11e-108(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-33NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]