PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.051660.8 | ||||||||
Common Name | Csa_6G296960, LOC101222024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 357aa MW: 39057.1 Da PI: 7.8941 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cucsa.051660.8 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.04E-16 | 156 | 214 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.52E-24 | 157 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-17 | 157 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 157 | 213 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-32 | 157 | 219 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-13 | 248 | 293 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-6 | 248 | 292 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-13 | 249 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MFDLNLNVDS PDAAQKEDSV VFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFTF NFEILKAGSA NDVVTKELFP IGGTVNADFG ILQGHNSASS SSTSSRKNWI 120 NLAFDRSGSA GEGRTVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKAYDKAAIK CNGREAVTNF EPSTYGEKIS 300 EGSSEGGWNM LDLNLGISPP SLDNSPKDSE GHLRFQSGSC YANERSTMVT IEPRIS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 0.0 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657226.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 1e-115 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A1S3CK84 | 0.0 | A0A1S3CK84_CUCME; ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
STRING | XP_004148250.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004164686.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.2 | 1e-114 | related to AP2.7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.051660.8 |
Entrez Gene | 101222024 |
Publications ? help Back to Top | |||
---|---|---|---|
|