PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.051660.6 | ||||||||
Common Name | Csa_6G296960, LOC101222024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | AP2 | ||||||||
Protein Properties | Length: 372aa MW: 40785 Da PI: 7.1019 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cucsa.051660.6 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.5 | 3.4e-13 | 248 | 298 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g Cucsa.051660.6 248 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIKCNG 298 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.36E-16 | 156 | 214 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.96E-24 | 157 | 215 | No hit | No description |
SMART | SM00380 | 6.3E-32 | 157 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 157 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-17 | 157 | 214 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-9 | 248 | 298 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-26 | 248 | 308 | No hit | No description |
SuperFamily | SSF54171 | 6.21E-17 | 248 | 307 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.54 | 249 | 306 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-33 | 249 | 312 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-16 | 249 | 306 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 250 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 288 | 308 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MFDLNLNVDS PDAAQKEDSV VFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFTF NFEILKAGSA NDVVTKELFP IGGTVNADFG ILQGHNSASS SSTSSRKNWI 120 NLAFDRSGSA GEGRTVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE 300 AVTNFEPSTY GEKISEGSSE GGWNMLDLNL GISPPSLDNS PKDSEGHLRF QSGSCYANER 360 STMVTIEPRI S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681922 | 0.0 | LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148250.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q9SK03 | 1e-111 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A0A0KCQ8 | 0.0 | A0A0A0KCQ8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148250.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004164686.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-124 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.051660.6 |
Entrez Gene | 101222024 |
Publications ? help Back to Top | |||
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