PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.051660.5
Common NameCsa_6G296960, LOC101222024
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 411aa    MW: 44888.6 Da    PI: 5.9571
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.051660.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-17156205155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cucsa.051660.5 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205
                     78*******************......55************************997 PP
2AP241.33.9e-13248298155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  Cucsa.051660.5 248 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIKCNG 298
                     89********.7******...5...334336**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-9156205IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-16156214IPR016177DNA-binding domain
CDDcd000184.62E-24157215No hitNo description
Gene3DG3DSA:3.30.730.102.6E-17157214IPR001471AP2/ERF domain
SMARTSM003806.3E-32157219IPR001471AP2/ERF domain
PROSITE profilePS5103217.649157213IPR001471AP2/ERF domain
PfamPF008471.1E-8248298IPR001471AP2/ERF domain
CDDcd000181.70E-26248308No hitNo description
SuperFamilySSF541717.19E-17248307IPR016177DNA-binding domain
PROSITE profilePS5103215.54249306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-16249306IPR001471AP2/ERF domain
SMARTSM003808.5E-33249312IPR001471AP2/ERF domain
PRINTSPR003673.9E-6250261IPR001471AP2/ERF domain
PRINTSPR003673.9E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFDLNLNVDS PDAAQKEDSV VFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS  60
TRAGGELFTF NFEILKAGSA NDVVTKELFP IGGTVNADFG ILQGHNSASS SSTSSRKNWI  120
NLAFDRSGSA GEGRTVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE  300
AVTNFEPSTY GEKISEGSSE GGWNMLDLNL GISPPSLDNS PKDSEGHLRF QSGSCYANER  360
STMMESNADA AVGDPPMKGP VITSEHAPLW NGLQTSFFPS EVSFTDVILL *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148250.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-113RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0A0KCQ80.0A0A0A0KCQ8_CUCSA; Uncharacterized protein
STRINGXP_004148250.10.0(Cucumis sativus)
STRINGXP_004164686.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-126related to AP2.7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]