PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050240.6
Common NameCsa_7G428290
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 331aa    MW: 36655.4 Da    PI: 7.4996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050240.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC++fa  G C  G+ C F+H+
  Cucsa.050240.6  3 KRVLCKYFAH-GACLKGEYCEFSHD 26
                    99****6666.*************5 PP
2zf-CCCH25.42.4e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G C +G+rC++ H+
  Cucsa.050240.6 34 VCTYYQK-GRCAFGSRCRYDHV 54
                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1122956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00132955IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-43453IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.049135161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.39E-15192268No hitNo description
Gene3DG3DSA:3.30.40.102.6E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.73E-4203263No hitNo description
PROSITE profilePS5008912.416204262IPR001841Zinc finger, RING-type
PfamPF000971.3E-7204261IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001846.5E-8204261IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
SMARTSM003566.6291319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.291291320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSKRVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE  60
SCSNVQQSHG SESVSVAHSQ LSRPLSPFSG STSELASSEI PSLPLREEAA WSGEFVRPDG  120
LDDWVNGEAR VVGPADIPIC SFAAAGGDCP RGENCPHIHG DLCPTCGKQC LHPFRTDERE  180
EHLKACEKKQ KHLESLKHSQ DIECSVCLER VLSKTETAER KFGILSECDH PFCISCIRNW  240
RNSSSTSGMD INSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKS RLRSIDCKHF  300
NFGNGNCPFG SSCFYKVSLP LKAVTSVSLS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659786.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-141C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0A0KBH20.0A0A0A0KBH2_CUCSA; Uncharacterized protein
STRINGXP_004135923.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-139C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]