PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.050240.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 358aa MW: 39957 Da PI: 7.2993 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC++fa G C G+ C F+H+ Cucsa.050240.4 3 KRVLCKYFAH-GACLKGEYCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 25.3 | 2.6e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C +G+rC++ H+ Cucsa.050240.4 34 VCTYYQK-GRCAFGSRCRYDHV 54 6******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.7E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.685 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 29 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.049 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.53E-14 | 191 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.9E-10 | 197 | 263 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 3.51E-4 | 203 | 263 | No hit | No description |
Pfam | PF00097 | 1.5E-7 | 204 | 261 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.416 | 204 | 262 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 6.5E-8 | 204 | 261 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 228 | 237 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 14.126 | 291 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.22 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MSKRVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE 60 SCSNVQQSHG SESVSVAHSQ LSRPLSPFSG STSELASSEI PSLPLREEAA WSGEFVRPDG 120 LDDWVNGEAR VVGPADIPIC SFAAAGGDCP RGENCPHIHG DLCPTCGKQC LHPFRTDERE 180 EHLKACEKKQ KHLESLKHSQ DIECSVCLER VLSKTETAER KFGILSECDH PFCISCIRNW 240 RNSSSTSGMD INSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKS RLRSIDCKHF 300 NFGNGNCPFG SSCFYKHAHR DGRLEEIALR HIGNEDGLTV IAKNLRLSDF LSDLHIR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 0.0 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008461277.2 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin | ||||
Swissprot | E0X9N4 | 1e-164 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1S3CEC1 | 0.0 | A0A1S3CEC1_CUCME; E3 ubiquitin-protein ligase makorin | ||||
STRING | XP_008461277.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-157 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.050240.4 |
Publications ? help Back to Top | |||
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