PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.047180.1
Common NameCsa_6G520300, LOC101219535
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 407aa    MW: 47478.7 Da    PI: 6.3134
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.047180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84.2e-34141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++++ ++sw++ ++sf+v+++ ef+ ++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F+kg+ +ll++
  Cucsa.047180.1  14 FLTKTYEMVNDPSTDPIVSWTSGNRSFIVWNPLEFSCELLPRFFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFEKGRPDLLRN 99 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Cucsa.047180.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-37597IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5710103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDESQGSSNT LPPFLTKTYE MVNDPSTDPI VSWTSGNRSF IVWNPLEFSC ELLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFE KGRPDLLRNI HRRKPVHSHS LQNVQGQGFP  120
SPLLDLERKR FKEEIERRKQ TNEKLLLESQ RHEQEHRDFQ LQMRLMKERF ENMQQQQQIL  180
LSHVARVLQK PELTIYFVPE PNSHDRKRRL TTVTYYYNES SAEDDLEEHS HSMSKQQIDY  240
SSTSDLNMEH LDQLDSSLTF WERTIHDVDH TIFLPNMKFN QTKRDIQSPS TPFVQLDRSH  300
QSKSHVIDMN SEPVGSIASD SIASRKEADE TTASARNGAN DVFWEQFLTE NPGSSDLPKV  360
ASEGKDSDNG RKNETKSRGF GKLWWTGNKI NNLAEQMEHL TPTEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-22610313120Heat shock factor protein 1
5d5u_B6e-22410320129Heat shock factor protein 1
5d5v_B6e-22410320129Heat shock factor protein 1
5d5v_D6e-22410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134595.10.0PREDICTED: heat stress transcription factor A-4c-like isoform X1
RefseqXP_011658259.10.0PREDICTED: heat stress transcription factor A-4c-like isoform X1
TrEMBLA0A0A0KLR60.0A0A0A0KLR6_CUCSA; Uncharacterized protein
STRINGXP_004134595.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-93heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]