PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.046380.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 739aa    MW: 80881.3 Da    PI: 7.2694
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.046380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07190210425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C+f+a+ G+C  G++C+F H
  Cucsa.046380.1 190 AICDFYAK-GWCIKGSSCSFLH 210
                     68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.216187213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6188210IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5190210IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MDTKRHDKHL RSETVTATEN SEVNKLSFVG ETENSGNIEF SSPSGKPLEK KEEQSHGEST  60
KFESQKCLKD KGTEDQEPTV GDKDVEALRN KDFGGSSYNK VPLCNSEVMV ATATNGSSDT  120
LEDSDIGSKN HSAGRIIGTK NPERESEQMG MQLDNGENQM ASRSTASKKR SRSLTPVADV  180
NGEEKHPAAA ICDFYAKGWC IKGSSCSFLH IKNNAYGSDQ HSEERAGAAC LKKQAQLNEG  240
LQYNADVLKS PVIRHPPNSS LLKDSSLSLK FGISSERTLP RDFSQSQGWD GLHEKNKILL  300
HQREDSLLSA LPDCQKLPST SFGASFPLSR GLSASRLELP PEFGVSSDGF TPLGVMEEPT  360
NVACPRLLND HLSPVLRTSL NSNPTLPRDA ILSSRFTTSN ASLFPLTSSS SASLLNAHKM  420
SIIDREHHVS TPASSLMRSS PFSASGSDNS FTHVSKNPSE YKMKCSSDDW EPSVPFRPSF  480
FIPSITTASQ YDPFLDSMEV PRIVGCSYNV TLDRQGHEEA SPLSTLQRAS GNFVVPGSSK  540
PEFNDDTSSL SSHNKAADKN GKVGHLQGKD PLLLEPEIRG SFGLDGRFSR TREDDHKGLT  600
CEKDVTKKKK MGIGGELKLP NISLHEKDSE ADSDRQLGDM DGKHLMEGNA PKESKATRHF  660
RSALIELVKE ILKPKWREGH LKKDVHNTVV KKTFDKVLGA LQSHQVPTTV ESVKQYLSSS  720
RPKIEKLVEG YVSKYGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134948.20.0PREDICTED: uncharacterized protein LOC101203293
TrEMBLA0A0A0KHP20.0A0A0A0KHP2_CUCSA; Uncharacterized protein
STRINGXP_004155642.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-33C3H family protein