PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.046300.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 217aa MW: 23860.6 Da PI: 9.8534

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.046300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	16	72	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Cucsa.046300.1 16 TLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 72 689***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.0E-34	16	71	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDKPHHHQQQ QSSSGTLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV 60 PVGGGCRKNK RLKTSSSSST SVNANSTSPP SQNPRLLIHN PINSTTVPNI VSSSALNHTN 120 SSMFFGLDSI GGGSGGLGLS SSGLLSHFND PHQQPFSSNH FHHPTISFDR NSHLLGNIDP 180 NLMTSMKEIK IEDLNRLIIV VNSKAYVDID DTRNLY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-177	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-177	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134698.1	1e-143	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A0A0KI37	1e-142	A0A0A0KI37_CUCSA; Uncharacterized protein
STRING	XP_004134698.1	1e-142	(Cucumis sativus)
STRING	XP_004155559.1	1e-142	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.046300.1