PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.044640.1

Common Name

Csa_6G511070, LOC101213008

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 676aa MW: 78157.9 Da PI: 6.5126

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.044640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.7e-21	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ +kk +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Cucsa.044640.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPAKKKPIGEHHRDRKSVRCGCDAKMYLSKEVsegVAQWFVVQFSNVHNHELL 159 59******************8888.***************************************98766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-19	274	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.631	546	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.9E-7	551	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-4	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MASIPSKNVW IRRQQCPCGD WKCYVSYDGE GEETSVAAQL VKSERVSSEA MVAPYVGMVF 60 KSDNDAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAK KKPIGEHHRD 120 RKSVRCGCDA KMYLSKEVSE GVAQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKRDVR NFVQNRKKIV QEHDAMLNEK REIDTMELLE ACKATKESDE 240 EFVYDFTVDA NDKVEHVAWS YGDSVNAYGM FGDVVYFDTT YYSITYGLLL GVWLGIDNHG 300 RTIFFGCVLL QDETSRSFAW ALQTFIRFMR GAFPQTILTD LDPGLRDAIR SELPGTKHII 360 SRWNILSKVS SWFSLPLGSR YAEFKSEFDL LYSVESSEDF EIRWNQMVAM FGLVSDKHVD 420 LLFSFREYWV PSYIRGYLLA QMATPTYFKA VDTFLKGIFS AQMCLRSFFE QVGISANFQS 480 HEHQVMQYLQ VKTNIPIEEH AQSILTPFAF NALQHELVLA MQYAASEMAD GSYLIHHFKK 540 MDGERLVMWI ADSEQIHCSC KEFESSGLLC RHALRIFIIK NYFQLPDKYY LSRWRRESSL 600 GLGDGHGIES NDGDWFHEYQ RLTEALFAES SITKERSEHV RRELMKEITR LLNDIRRMPE 660 SEGIAAMDLT ESLNG*

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MASIPSKNVW IRRQQCPCGD WKCYVSYDGE GEETSVAAQL VKSERVSSEA MVAPYVGMVF  60
KSDNDAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAK KKPIGEHHRD  120
RKSVRCGCDA KMYLSKEVSE GVAQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKRDVR NFVQNRKKIV QEHDAMLNEK REIDTMELLE ACKATKESDE  240
EFVYDFTVDA NDKVEHVAWS YGDSVNAYGM FGDVVYFDTT YYSITYGLLL GVWLGIDNHG  300
RTIFFGCVLL QDETSRSFAW ALQTFIRFMR GAFPQTILTD LDPGLRDAIR SELPGTKHII  360
SRWNILSKVS SWFSLPLGSR YAEFKSEFDL LYSVESSEDF EIRWNQMVAM FGLVSDKHVD  420
LLFSFREYWV PSYIRGYLLA QMATPTYFKA VDTFLKGIFS AQMCLRSFFE QVGISANFQS  480
HEHQVMQYLQ VKTNIPIEEH AQSILTPFAF NALQHELVLA MQYAASEMAD GSYLIHHFKK  540
MDGERLVMWI ADSEQIHCSC KEFESSGLLC RHALRIFIIK NYFQLPDKYY LSRWRRESSL  600
GLGDGHGIES NDGDWFHEYQ RLTEALFAES SITKERSEHV RRELMKEITR LLNDIRRMPE  660
SEGIAAMDLT ESLNG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134987.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0A0KH62	0.0	A0A0A0KH62_CUCSA; Uncharacterized protein
STRING	XP_004134987.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Cucsa.044640.1
Entrez Gene	101213008

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]