PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.043520.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 308aa    MW: 34147.4 Da    PI: 7.5298
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.043520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.2e-203898357
                    --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+t+t++q+++L+el+++   r psa+++++++++l    +++ ++V++WFqN++a+e++
  Cucsa.043520.1 38 SRWTPTTDQIRILKELYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 98
                    8****************98678*************************************97 PP
2Wus_type_Homeobox114.16.8e-3736100265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     Cucsa.043520.1  36 SSSRWTPTTDQIRILKELYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 100
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1131103IPR009057Homeodomain-like
PROSITE profilePS5007110.433399IPR001356Homeobox domain
SMARTSM003891.2E-535103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-73898IPR009057Homeodomain-like
PfamPF000462.3E-173898IPR001356Homeobox domain
CDDcd000861.91E-639100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEHPAKQQQQ EQGINDQGGE GGGGSNGKGG FLCRQSSSRW TPTTDQIRIL KELYYNNGVR  60
SPSADQIQRI SARLRQYGKI EGKNVFYWFQ NHKARERQKK RFTSNSTSPI TTSNTTTTTT  120
DFKISSTNNN INWKSEDHSS SSHNKFPPGI TIALIDSCFC SSFFFGYGRR WPYGKLRIWE  180
CSISSGGNSS VVGYRSHNMG SWIGIDPYSS PAAAAAGGSA NVFEKTKYVE ESMEDHEEQE  240
IETLPLFPIH GDRNNLGGFC SMKPEYSESY YTTTWYGRSD DNGAAGSRAS LELSLNSYAT  300
ISPDDGM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134866.11e-169PREDICTED: protein WUSCHEL
TrEMBLA0A0A0KH831e-168A0A0A0KH83_CUCSA; Uncharacterized protein
STRINGXP_004158873.11e-168(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-41WOX family protein