PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.038810.1
Common NameCsa_3G457670, LOC101206645
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 323aa    MW: 35184 Da    PI: 5.7947
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.038810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-17219253135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Cucsa.038810.1 219 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 253
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-7216303IPR016679Transcription factor, GATA, plant
SMARTSM004011.0E-15213263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44213249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-14214251IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-14215277No hitNo description
CDDcd002022.28E-12218265No hitNo description
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
PfamPF003207.7E-15219253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MELPGYLVGG YYGTGAPQFS PDNKKSTAEH FPLDEYLLDF SNEDVAMHSG FFDNVAGNCS  60
DSSTLTAIDS CNSSVSGGDN QLLAKFESGS FCEAQFSSEL CIPCDDLAEL EWLSNFVEES  120
FSTEEIDKDF PAIPFLSGGI SSAATPETSS SSGATAFGYG NAKTTTFFHS EALTLPGKAR  180
SKRSRATPCD WSTRLLQATA PEKTEGTMAK PETTSGRKCL HCAAEKTPQW RTGPMGPKTL  240
CNACGVRYKS GRLVPEYRPA SSPTFVSTKH SNSHRKVMEL RRQKEMQHQE QFVSQSSIFS  300
RSNGCDEYLI HRHNGGDFSH MM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447537.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO826324e-72GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A1S3BI990.0A0A1S3BI99_CUCME; GATA transcription factor
STRINGXP_004172012.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-71GATA transcription factor 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]