PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.032910.1
Common NameCsa_3G223330, LOC101203745
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 648aa    MW: 74158.2 Da    PI: 8.2309
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.032910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-09590635346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ +
   Cucsa.032910.1 590 DWSAVQERALVQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKKFTS 635
                      6********************************.*********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1107.7E-2292196IPR001623DnaJ domain
SuperFamilySSF465652.62E-2093201IPR001623DnaJ domain
SMARTSM002711.7E-1494169IPR001623DnaJ domain
PfamPF002261.4E-1895174IPR001623DnaJ domain
CDDcd062577.33E-1395166IPR001623DnaJ domain
PROSITE profilePS5007618.7695177IPR001623DnaJ domain
PRINTSPR006255.3E-9100118IPR001623DnaJ domain
PRINTSPR006255.3E-9118133IPR001623DnaJ domain
PRINTSPR006255.3E-9149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.5E-4456501IPR009057Homeodomain-like
PROSITE profilePS512936.32457512IPR017884SANT domain
SuperFamilySSF466896.5E-7457502IPR009057Homeodomain-like
SMARTSM007172.9E-5458511IPR001005SANT/Myb domain
CDDcd001678.79E-5461501No hitNo description
PfamPF002491.0E-5461501IPR001005SANT/Myb domain
PROSITE profilePS5129310.565586641IPR017884SANT domain
SuperFamilySSF466891.12E-9587636IPR009057Homeodomain-like
SMARTSM007173.0E-10587639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-6587636IPR009057Homeodomain-like
PfamPF002491.3E-7590635IPR001005SANT/Myb domain
CDDcd001671.01E-6591637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTVQANLRLL TYSQEIVDGQ PIYVASNCLP IKALKYEPAG HSFHNAALKL LGWEDEEVSD  60
ENEQAADDTE QKYAPSFDSY SSKGKKKSGG STQQDHYALL GLSHLRYLAT EEQIRKSYRE  120
TALKYHPDKQ AALLLAEETE AAKQAKKDEI ESHFKSIQEA YEVLIDPVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ SVPSLGDDKT PLKVVDDFYN FWYAFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLSE KARKEEYARI RTLVDNAYKR DPRIQRRKEE  300
EKAEKQRKKE AKFLAKKLQE EEAVRLAEEE KRRKEEEEKR AAELAQQQKK LKEKEKKLLR  360
KERTRLRTLS GPAISQSLLD LSAEDVENLC SSLDIERLRN ICDKMEGKKG MELAKVLRDA  420
QECNSSDTKH QECKKTEEQN GSTTANATAS LSGSLQKKER PWSKDEIELL RKGMQKYPKG  480
TSRRWEVISE YIGTERSVEE ILKATKTILL QKPDSAKAFD SFLEKRKPAQ SIASPLSTRE  540
ELEGVSSKKP EDNVAINGNL DMSSVGQNVN NQTPSNPSAN GVSSSSEQDD WSAVQERALV  600
QALKTFPKET NQRWERVAAA VPGKTVNQCK KKFTSMKENF RSRKNAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1719129520124Zuotin
5dje_B3e-1719129520124Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146256.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A0A0LAD60.0A0A0A0LAD6_CUCSA; Uncharacterized protein
STRINGXP_004146256.10.0(Cucumis sativus)
STRINGXP_004159872.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]