PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.029580.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

EIL

Protein Properties

Length: 262aa MW: 30213.7 Da PI: 7.6663

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.029580.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	349.4	7.1e-107	28	261	1	248
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 ++lkkrmw+d++++k++ker+ + +e+ +s ++e++rrkkm+raQD+iLk M k+me+c+aqGfvYgi+pekgkpv+g+s+sLr+WW Cucsa.029580.1 28 DDLKKRMWRDRQRMKKMKERHDE----EEP-----ESAAREEASRRKKMARAQDSILKCMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWW 113 79***********88888776....455.....556789************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS EIN3 96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190 k++v+f++++p+ai+k + ++i +++ ++++s h l +lqDTtlgS+Lsalmqhc ppqr+fplekg++pPWWPtG+elwwge+g++ + Cucsa.029580.1 114 KDDVRFEQDAPMAIAKFLP-KVI----EESGIDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGH 203 ************944.444....2344589********************************************************* PP -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHH CS EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfalls 248 g ppykkphdlkkawk+svL+avikhmsp+++++++l rqsk lq km+ake+ ++++ Cucsa.029580.1 204 GVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMKKLIRQSKNLQAKMTAKETITWAK 261 ******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.9E-108	28	262	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.4E-61	144	262	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.26E-54	146	261	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVEFHGEIRS HNDEDDRDQE PEEEISYDDL KKRMWRDRQR MKKMKERHDE EEPESAAREE 60 ASRRKKMARA QDSILKCMDK IMEACKAQGF VYGIVPEKGK PVTGSSESLR EWWKDDVRFE 120 QDAPMAIAKF LPKVIEESGI DPNSFLHLLT DLQDTTLGSI LSALMQHCIP PQRKFPLEKG 180 LAPPWWPTGN ELWWGEQGAA GGHGVPPYKK PHDLKKAWKI SVLAAVIKHM SPDLDNMKKL 240 IRQSKNLQAK MTAKETITWA KV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	2e-51	147	262	4	119	Protein ETHYLENE INSENSITIVE 3
4zds_B	2e-51	147	262	4	119	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	0.0	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146925.2	0.0	PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9FJQ5	1e-114	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A1S3BXX7	1e-137	A0A1S3BXX7_CUCME; ETHYLENE INSENSITIVE 3-like 5 protein
STRING	XP_004146925.1	0.0	(Cucumis sativus)
STRING	XP_004169640.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF322	34	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	4e-96	EIL family protein

Link Out ? help Back to Top
Phytozome	Cucsa.029580.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]