PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.019230.1

Common Name

Csa_5G003630

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 263aa MW: 30383.9 Da PI: 6.8729

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.019230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.6e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k+ +w+vt + ++HnHel Cucsa.019230.1 63 EFYSEFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGSTPIKTPNENKPQRNRKSSRCGCQAYMRISKTLelgPPEWRVTGFANHHNHELL 156 6************999887735667799*********9999999****************998666789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-18	63	156	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MMSEDTGPLL VVYDDPSDQQ SLSLDETGST EESPDETRLS LDSSNDATPY IGQRFPTHDS 60 AYEFYSEFAK RCGFSIRRHR TEGKDGIGKG LTRRYFVCHR AGSTPIKTPN ENKPQRNRKS 120 SRCGCQAYMR ISKTLELGPP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SEIDKGRILM 180 YAKSGISVQQ MMRLMELEKG VEPGYLPFTE KDVRNLLQSF RKLDHEEESI DLLRMCRNIK 240 EKDPNFKFEY VIDSNNRLEN IAX

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681885	0.0	LN681885.1 Cucumis melo genomic scaffold, anchoredscaffold00107.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654451.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	1e-154	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0A0KPF5	0.0	A0A0A0KPF5_CUCSA; Uncharacterized protein
TrEMBL	A0A1S4E547	0.0	A0A1S4E547_CUCME; protein FAR1-RELATED SEQUENCE 11 isoform X3
TrEMBL	A0A1S4E549	0.0	A0A1S4E549_CUCME; protein FAR1-RELATED SEQUENCE 11 isoform X1
STRING	XP_008465239.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-145	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Cucsa.019230.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]