PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.011440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24425.2 Da PI: 4.9945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l ++++ +G g W++ a+ g++Rt+k+c++rw++yl Cucsa.011440.1 17 KGPWTMEEDSMLMNYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ +++ ++G++ W++Iar+++ gRt++++k++w++ Cucsa.011440.1 70 RGNITPEEQLLIMELHSKWGNR-WSKIARHLP-GRTDNEIKNYWRT 113 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 10 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.382 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.11E-30 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-8 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 25.535 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-11 | 74 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGTERLSSSQ DDDEVRKGPW TMEEDSMLMN YIANHGEGVW NSLAKAAGLK RTGKSCRLRW 60 LNYLRPDVRR GNITPEEQLL IMELHSKWGN RWSKIARHLP GRTDNEIKNY WRTRIQKHIK 120 QQEEVERVRD QMISIGSCSE TNDDCAISPW SQVSSFSNVA EPMEISHDYF PSSQGDMEAM 180 GYQQTSWDRG DGANDNYWSM EDLWSMQLLD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 119 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681890 | 1e-174 | LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048. | |||
GenBank | LN713263 | 1e-174 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655413.1 | 1e-156 | PREDICTED: myb-related protein 340-like | ||||
Swissprot | P81391 | 1e-78 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A1S3C8M7 | 1e-150 | A0A1S3C8M7_CUCME; myb-related protein 340-like | ||||
STRING | XP_004156725.1 | 1e-155 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 6e-79 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.011440.1 |
Publications ? help Back to Top | |||
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