PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.000200.1 | ||||||||
Common Name | Csa_6G216960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 31933.4 Da PI: 10.0189 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.4 | 1.3e-32 | 8 | 67 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-.SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers.aedpkvveitYegeHnhek 60 +Dg+nWrKYGqK+vkgse+prsYY+Ct+++Cpv+k+vers +++++++ei+Y+++Hnh+k Cucsa.000200.1 8 EDGFNWRKYGQKVVKGSENPRSYYKCTFPNCPVRKQVERSlNNNGQITEIVYKSKHNHPK 67 7**************************************934689*************85 PP | |||||||
2 | WRKY | 101.2 | 6.2e-32 | 160 | 218 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy WrKYGqK+vkg+++prsYY+Ct++gC v+k++er+++d ++v++tYeg+Hnh+ Cucsa.000200.1 160 LDDGYWWRKYGQKVVKGNPNPRSYYKCTYPGCGVRKHIERASHDFRAVVTTYEGKHNHD 218 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-29 | 7 | 68 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 7 | 67 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-25 | 7 | 68 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 8 | 66 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.501 | 8 | 68 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.1E-34 | 145 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-28 | 152 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.657 | 155 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-35 | 160 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-24 | 161 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRNRSGSEDG FNWRKYGQKV VKGSENPRSY YKCTFPNCPV RKQVERSLNN NGQITEIVYK 60 SKHNHPKPDF TRRSSSSFSS SSSSSSFEPA QLKSSIPSHS VTTPENSSIT IGDDHSDQAH 120 PRRWKSESSE KEEMIRGGGG VKTMREERIV VQTISNVDKL DDGYWWRKYG QKVVKGNPNP 180 RSYYKCTYPG CGVRKHIERA SHDFRAVVTT YEGKHNHDIP TARAGKPILS NQQGRNNEVA 240 SSSIGGDPRS SSKICSGTNG LLRLTNMLWN NKEEVVDNIY ELL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 8 | 220 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 8 | 220 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984030 | 0.0 | GU984030.1 Cucumis sativus WRKY protein (WRKY38) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274406.1 | 1e-161 | probable WRKY transcription factor 33-like | ||||
Swissprot | Q6B6R4 | 2e-86 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
Swissprot | Q6IEQ7 | 2e-86 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A0A0KCF6 | 0.0 | A0A0A0KCF6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004171638.1 | 1e-161 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-75 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.000200.1 |