PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.23.191.1 | ||||||||
Common Name | COCSUDRAFT_9572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C3H | ||||||||
Protein Properties | Length: 92aa MW: 10969.5 Da PI: 8.4904 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3.1e-08 | 34 | 55 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C+++ r G+C G+ C++aHg gw1.23.191.1 34 EPCPDYKR-GICLLGSACPYAHG 55 89******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.49E-6 | 30 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 30 | 56 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 34 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
CPMKHTHPWE ECCYAHPHEN ARRRDPRKYQ YVAEPCPDYK RGICLLGSAC PYAHGVYERN 60 LHPSKYRTQM CTETGHCSRK VCFFAHETWQ LR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005643022.1 | 5e-64 | hypothetical protein COCSUDRAFT_9572, partial | ||||
Swissprot | Q10EL1 | 3e-34 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | I0YJA9 | 1e-62 | I0YJA9_COCSC; Uncharacterized protein (Fragment) | ||||
STRING | XP_005643022.1 | 2e-63 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP60 | 15 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 2e-36 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17036535 |
Publications ? help Back to Top | |||
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