PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.4_#_114 | ||||||||
Common Name | COCSUDRAFT_40465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 27446 Da PI: 7.0686 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 40 | 8.5e-13 | 104 | 175 | 13 | 84 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 +++ + +Pl+ ik+i+ d+dv++is + ++ka el++ l r+ +a + kr+t+k d++ av fgenesh1_pg.4_#_114 104 QQNTNPFGFPLSLIKRIMCLDPDVTRISGDGLKAVAKAAELMVEILGSRAAKEALSHKRKTIKLGDVERAVR 175 445555679************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00398 | 3.9E-11 | 2 | 79 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 13.587 | 3 | 65 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 8.12E-12 | 3 | 66 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 5.0E-13 | 4 | 68 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.17E-11 | 4 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.30.10 | 8.0E-13 | 4 | 59 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.20.10 | 2.1E-15 | 60 | 175 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.45E-17 | 98 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-11 | 112 | 174 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MAAKRAPTAF FIFSEEQREA TRAECQAQAE PRVKVSVGAV AKAIGEKWRA LTDEEKASYK 60 EKVAERAKAL ASAAADSAPA AGEQGEGEDH VGEEQERDHH ADAQQNTNPF GFPLSLIKRI 120 MCLDPDVTRI SGDGLKAVAK AAELMVEILG SRAAKEALSH KRKTIKLGDV ERAVRMDRRL 180 VEIGLKEVLA EDMFREAGGK GPLKEAGNRG NVGRDEVMEG DAPQAANEAK AAGSKKRAKE 240 DDKVRHITDF FAR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649677.1 | 0.0 | hypothetical protein COCSUDRAFT_40465 | ||||
TrEMBL | I0Z3B4 | 1e-180 | I0Z3B4_COCSC; Uncharacterized protein | ||||
STRING | XP_005649677.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4674 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50490.1 | 2e-08 | nuclear factor Y, subunit C5 |
Link Out ? help Back to Top | |
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Entrez Gene | 17043136 |
Publications ? help Back to Top | |||
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